Variant report

Variant	rs17059678
Chromosome Location	chr6:131162265-131162266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10499177	0.84[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11969461	0.82[CHB][hapmap]
rs12527605	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs12528626	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12529894	0.92[CEU][hapmap];0.83[CHB][hapmap];0.87[TSI][hapmap]
rs12660135	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12661651	0.92[CEU][hapmap];0.87[MKK][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12663183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1332492	0.83[CHB][hapmap]
rs17059736	0.81[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];0.91[MKK][hapmap];0.93[ASN][1000 genomes]
rs17059852	0.92[CEU][hapmap];0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs17832366	0.84[CEU][hapmap];0.87[TSI][hapmap]
rs1855078	0.83[CHB][hapmap]
rs2008593	0.85[JPT][hapmap]
rs2327006	0.83[CHB][hapmap]
rs3777452	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs3777464	0.88[TSI][hapmap]
rs3798251	0.84[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4513821	0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs67836126	0.86[ASN][1000 genomes]
rs6923182	0.83[CHB][hapmap]
rs6927047	0.82[JPT][hapmap]
rs6941909	0.90[CEU][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs72998266	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73000206	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73000216	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73000246	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73000272	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs928592	0.85[JPT][hapmap]
rs9321258	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9483193	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9483194	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9483195	0.93[ASN][1000 genomes]
rs9492759	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9492762	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9492763	0.93[ASN][1000 genomes]
rs9492768	0.82[ASN][1000 genomes]
rs9492776	0.83[CHB][hapmap]
rs9492782	0.83[CHB][hapmap]
rs9492784	0.83[CHB][hapmap]
rs9492785	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
2	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
3	chr6:131149000-131172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
5	chr6:131150600-131183400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:131152800-131168000	Weak transcription	Fetal Kidney	kidney
8	chr6:131153600-131162400	Weak transcription	Fetal Lung	lung
9	chr6:131154000-131173800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:131155000-131174600	Weak transcription	Aorta	Aorta
11	chr6:131157600-131170200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:131157800-131162400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:131157800-131163400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:131157800-131168200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:131157800-131170200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:131158000-131172200	Weak transcription	Brain Anterior Caudate	brain
17	chr6:131158200-131163000	Strong transcription	HepG2	liver
18	chr6:131158200-131173800	Weak transcription	NH-A	brain
19	chr6:131158200-131179400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:131158200-131190600	Weak transcription	Spleen	Spleen
21	chr6:131158200-131214400	Weak transcription	Lung	lung
22	chr6:131158400-131163000	Strong transcription	Fetal Muscle Trunk	muscle
23	chr6:131158400-131168200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr6:131158600-131174400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:131159000-131174600	Weak transcription	Placenta	Placenta
26	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
27	chr6:131159600-131162800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:131159600-131163400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:131159600-131174400	Weak transcription	A549	lung
30	chr6:131159800-131163800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:131160200-131162400	Weak transcription	Ovary	ovary
32	chr6:131160200-131167600	Weak transcription	NHDF-Ad	bronchial
33	chr6:131160400-131162800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:131160400-131164200	Weak transcription	Brain Angular Gyrus	brain
35	chr6:131160600-131162400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:131160600-131162800	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr6:131160600-131167000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:131160600-131179200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:131160800-131162400	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:131161000-131165200	Enhancers	Liver	Liver
41	chr6:131161000-131186600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr6:131161200-131168000	Weak transcription	Primary B cells from cord blood	blood
43	chr6:131161200-131168600	Weak transcription	NHLF	lung
44	chr6:131161200-131174400	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:131161200-131174400	Weak transcription	Fetal Intestine Small	intestine
46	chr6:131161400-131162400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:131161400-131172000	Weak transcription	Brain Substantia Nigra	brain
48	chr6:131161400-131172200	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:131161600-131162400	Weak transcription	Fetal Stomach	stomach
50	chr6:131161600-131176800	Weak transcription	Dnd41	blood

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