Variant report

Variant	rs9492768
Chromosome Location	chr6:131275102-131275103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10499177	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12527605	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12528626	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12529894	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12660135	0.80[ASN][1000 genomes]
rs12661651	0.80[ASN][1000 genomes]
rs12663183	0.80[ASN][1000 genomes]
rs17059678	0.82[ASN][1000 genomes]
rs17059736	0.89[ASN][1000 genomes]
rs17059852	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2020972	0.91[EUR][1000 genomes]
rs2327006	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2327007	0.89[ASN][1000 genomes]
rs3777452	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777464	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3798251	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4513821	0.88[ASN][1000 genomes]
rs66491359	0.81[ASN][1000 genomes]
rs67836126	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6941909	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72985722	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72987859	0.86[EUR][1000 genomes]
rs72998266	0.84[ASN][1000 genomes]
rs73000206	0.82[ASN][1000 genomes]
rs73000216	0.86[ASN][1000 genomes]
rs73000246	0.89[ASN][1000 genomes]
rs73000272	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9321258	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs946349	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9483193	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9483194	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9483195	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492759	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492762	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492763	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492776	0.93[ASN][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:131255200-131276000	Weak transcription	Left Ventricle	heart
5	chr6:131255400-131276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
7	chr6:131255800-131276200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:131255800-131277400	Weak transcription	Psoas Muscle	Psoas
9	chr6:131256000-131279400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:131257400-131281800	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:131260000-131286200	Weak transcription	HSMMtube	muscle
12	chr6:131264800-131277800	Weak transcription	Gastric	stomach
13	chr6:131265600-131276000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:131266000-131280600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:131266000-131283800	Weak transcription	Lung	lung
16	chr6:131266000-131287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:131266800-131277200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:131266800-131287200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:131267000-131286000	Weak transcription	Brain Angular Gyrus	brain
20	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:131267200-131277000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:131267200-131277200	Weak transcription	Small Intestine	intestine
23	chr6:131267200-131281200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:131267200-131282200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:131267400-131279600	Weak transcription	HMEC	breast
26	chr6:131267400-131280200	Weak transcription	Brain Anterior Caudate	brain
27	chr6:131267400-131281600	Weak transcription	GM12878-XiMat	blood
28	chr6:131267400-131286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:131267400-131287200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:131267600-131275600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:131267600-131275600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:131267600-131284000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:131267600-131287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:131267800-131276000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:131267800-131286000	Weak transcription	NHDF-Ad	bronchial
36	chr6:131267800-131288200	Weak transcription	NH-A	brain
37	chr6:131268200-131279400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:131268400-131279800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:131268400-131280600	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:131268400-131287200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:131269000-131276000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:131269000-131276000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:131269000-131276200	Weak transcription	Spleen	Spleen
44	chr6:131269000-131276800	Weak transcription	HUVEC	blood vessel
45	chr6:131269000-131290400	Weak transcription	Right Ventricle	heart
46	chr6:131269400-131286000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:131271000-131279200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:131271400-131279600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:131272200-131275600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:131272200-131301000	Weak transcription	Placenta	Placenta

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