Variant report

Variant	rs12663183
Chromosome Location	chr6:131144515-131144516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10499177	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11969461	0.82[CHB][hapmap]
rs12527605	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs12528626	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs12529894	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs12660135	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661651	1.00[CEU][hapmap];0.84[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17059736	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs17059852	0.92[CEU][hapmap];0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs17832366	0.84[CEU][hapmap]
rs2008593	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2327006	0.83[CHB][hapmap]
rs3777452	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs3798251	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs4513821	0.92[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs67836126	0.84[ASN][1000 genomes]
rs6923182	0.83[CHB][hapmap]
rs6927047	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs6941909	0.90[CEU][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs72998266	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73000206	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73000216	0.91[ASN][1000 genomes]
rs73000246	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73000272	0.91[ASN][1000 genomes]
rs928592	0.85[JPT][hapmap]
rs9321258	0.91[ASN][1000 genomes]
rs9483193	0.91[ASN][1000 genomes]
rs9483194	0.91[ASN][1000 genomes]
rs9483195	0.91[ASN][1000 genomes]
rs9492759	0.91[ASN][1000 genomes]
rs9492762	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs9492763	0.91[ASN][1000 genomes]
rs9492768	0.80[ASN][1000 genomes]
rs9492776	0.83[CHB][hapmap]
rs9492782	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131159200	Weak transcription	HSMM	muscle
2	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
3	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
4	chr6:131138400-131147400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:131142600-131147600	Enhancers	HepG2	liver
6	chr6:131143600-131146400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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