Variant report

Variant	rs9483193
Chromosome Location	chr6:131254409-131254410
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:131252764..131256680-chr6:131257995..131261585,5	K562	blood:
2	chr6:131252386..131254496-chr6:131384109..131386191,2	K562	blood:
3	chr6:131250056..131252912-chr6:131253561..131255639,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10499177	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527605	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12528626	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529894	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12660135	0.91[ASN][1000 genomes]
rs12661651	0.91[ASN][1000 genomes]
rs12663183	0.91[ASN][1000 genomes]
rs17059678	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17059736	1.00[ASN][1000 genomes]
rs17059852	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17832366	0.81[EUR][1000 genomes]
rs3777452	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777464	0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3798251	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4513821	0.98[ASN][1000 genomes]
rs67836126	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6941909	0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72985722	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72998266	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73000206	0.93[ASN][1000 genomes]
rs73000216	0.96[ASN][1000 genomes]
rs73000246	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73000272	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321258	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483194	0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483195	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492759	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492762	0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492763	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492768	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492776	0.82[ASN][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
3	chr6:131242600-131254800	Weak transcription	Fetal Kidney	kidney
4	chr6:131242800-131255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:131244800-131255000	Weak transcription	Lung	lung
7	chr6:131245000-131254800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:131246600-131254800	Weak transcription	Placenta	Placenta
10	chr6:131248800-131255000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:131249000-131254800	Weak transcription	HMEC	breast
12	chr6:131249000-131259000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:131249200-131255000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:131249800-131255000	Weak transcription	Small Intestine	intestine
15	chr6:131250800-131255000	Weak transcription	NH-A	brain
16	chr6:131250800-131255600	Weak transcription	Pancreas	Pancrea
17	chr6:131251000-131254800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:131251000-131255000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:131251200-131255000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:131251200-131268200	Weak transcription	Right Atrium	heart
21	chr6:131251400-131254800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:131251800-131254800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:131251800-131256200	Weak transcription	Aorta	Aorta
24	chr6:131253000-131254800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr6:131253000-131272800	Weak transcription	Dnd41	blood
26	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
27	chr6:131253400-131254800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:131253400-131255000	Enhancers	Brain Substantia Nigra	brain
29	chr6:131253400-131256200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:131253600-131254800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:131253600-131254800	Enhancers	HSMMtube	muscle
32	chr6:131253600-131255200	Enhancers	Brain Angular Gyrus	brain
33	chr6:131253600-131255200	Enhancers	Fetal Lung	lung
34	chr6:131253600-131257000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:131253600-131257400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr6:131253600-131257400	Enhancers	Adipose Nuclei	Adipose
37	chr6:131253800-131254600	Enhancers	A549	lung
38	chr6:131253800-131254800	Enhancers	Brain Anterior Caudate	brain
39	chr6:131253800-131255000	Enhancers	NHDF-Ad	bronchial
40	chr6:131253800-131255400	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr6:131253800-131255400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:131253800-131255800	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr6:131253800-131255800	Enhancers	Psoas Muscle	Psoas
44	chr6:131253800-131256000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:131253800-131256600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:131253800-131256600	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr6:131253800-131257200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:131253800-131257600	Enhancers	Osteobl	bone
49	chr6:131254000-131254800	Enhancers	Brain Hippocampus Middle	brain
50	chr6:131254000-131255200	Enhancers	H9 Cell Line	embryonic stem cell

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