Variant report

Variant	rs10499177
Chromosome Location	chr6:131215821-131215822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11969461	0.91[CHB][hapmap]
rs12527605	0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12528626	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529894	1.00[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12660135	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12661651	0.92[CEU][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12663183	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1332492	0.91[CHB][hapmap]
rs17059678	0.84[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17059736	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17059852	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17832366	0.84[CEU][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs1855078	0.91[CHB][hapmap]
rs2008593	0.84[CHB][hapmap]
rs2327006	0.91[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs3777452	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777464	0.82[MEX][hapmap];0.88[TSI][hapmap]
rs3798251	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4513821	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs67836126	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6923182	0.91[CHB][hapmap]
rs6927047	0.82[CHB][hapmap]
rs6941909	0.90[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72985722	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72998266	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73000206	0.93[ASN][1000 genomes]
rs73000216	0.96[ASN][1000 genomes]
rs73000246	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73000272	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs915171	0.86[JPT][hapmap]
rs928592	1.00[JPT][hapmap]
rs9321258	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483193	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483194	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483195	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492759	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492762	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492763	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492768	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492776	0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs9492782	0.91[CHB][hapmap]
rs9492784	0.91[CHB][hapmap]
rs9492785	0.91[CHB][hapmap]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
3	chr6:131170400-131217400	Weak transcription	Psoas Muscle	Psoas
4	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
5	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
6	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:131175600-131221600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:131179400-131222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:131187000-131223200	Weak transcription	Gastric	stomach
10	chr6:131187200-131216400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:131188200-131216400	Weak transcription	HSMMtube	muscle
12	chr6:131190400-131227000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:131190800-131224200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:131191000-131234400	Weak transcription	Esophagus	oesophagus
15	chr6:131191200-131224200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:131191200-131233000	Weak transcription	Spleen	Spleen
17	chr6:131194200-131222000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:131195800-131224200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:131198600-131224200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:131201000-131222400	Strong transcription	Dnd41	blood
21	chr6:131201800-131222000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:131203600-131234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:131204400-131228600	Weak transcription	Stomach Mucosa	stomach
24	chr6:131205200-131222000	Weak transcription	A549	lung
25	chr6:131208000-131222000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:131209000-131234000	Weak transcription	Fetal Thymus	thymus
27	chr6:131209200-131219600	Weak transcription	Fetal Heart	heart
28	chr6:131209600-131222000	Weak transcription	HMEC	breast
29	chr6:131209800-131217000	Weak transcription	Brain Substantia Nigra	brain
30	chr6:131209800-131228000	Weak transcription	HUVEC	blood vessel
31	chr6:131210600-131217800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:131210800-131222400	Strong transcription	HepG2	liver
33	chr6:131211000-131228400	Weak transcription	Small Intestine	intestine
34	chr6:131211200-131222000	Weak transcription	NHEK	skin
35	chr6:131211200-131234000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:131211400-131224000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:131211400-131234200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr6:131211600-131219600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:131211800-131219600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:131212000-131224600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr6:131212200-131220200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:131212200-131221800	Weak transcription	NH-A	brain
43	chr6:131212200-131222000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:131212600-131218200	Strong transcription	Fetal Intestine Large	intestine
45	chr6:131212800-131216400	Strong transcription	Adipose Nuclei	Adipose
46	chr6:131212800-131216800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:131212800-131217000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr6:131213200-131216000	Strong transcription	Fetal Stomach	stomach
49	chr6:131213200-131216000	Strong transcription	HSMM	muscle
50	chr6:131213200-131216400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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