Variant report

Variant	rs9492762
Chromosome Location	chr6:131260784-131260785
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131252764..131256680-chr6:131257995..131261585,5	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10499177	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969461	0.85[CEU][hapmap];0.91[CHB][hapmap]
rs12527605	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12528626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529894	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12660135	0.91[ASN][1000 genomes]
rs12661651	0.92[CEU][hapmap];0.91[ASN][1000 genomes]
rs12663183	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs1332492	0.85[CEU][hapmap];0.91[CHB][hapmap]
rs17059678	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17059736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17059852	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17832366	0.91[CEU][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs1855078	0.85[CEU][hapmap];0.91[CHB][hapmap]
rs2008593	0.84[CHB][hapmap]
rs2327006	0.92[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs3777452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777464	0.81[ASW][hapmap];0.85[CEU][hapmap];0.97[LWK][hapmap];0.82[MEX][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3798251	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4513821	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs67836126	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6923182	0.83[CEU][hapmap];0.91[CHB][hapmap]
rs6927047	0.82[CHB][hapmap]
rs6941909	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72985722	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72998266	0.95[ASN][1000 genomes]
rs73000206	0.93[ASN][1000 genomes]
rs73000216	0.96[ASN][1000 genomes]
rs73000246	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73000272	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs915171	0.86[JPT][hapmap]
rs928592	1.00[JPT][hapmap]
rs9321258	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483193	0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483194	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483195	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492759	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492763	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492768	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492776	1.00[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[MKK][hapmap];0.82[ASN][1000 genomes]
rs9492782	0.91[CHB][hapmap]
rs9492784	0.84[CEU][hapmap];0.91[CHB][hapmap]
rs9492785	0.85[CEU][hapmap];0.91[CHB][hapmap]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
3	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:131251200-131268200	Weak transcription	Right Atrium	heart
6	chr6:131253000-131272800	Weak transcription	Dnd41	blood
7	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
8	chr6:131255000-131274600	Weak transcription	Fetal Stomach	stomach
9	chr6:131255200-131262600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:131255200-131264600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:131255200-131265000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:131255200-131265800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:131255200-131276000	Weak transcription	Left Ventricle	heart
14	chr6:131255400-131264600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:131255400-131276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
17	chr6:131255800-131264400	Weak transcription	Fetal Intestine Small	intestine
18	chr6:131255800-131265800	Weak transcription	Pancreas	Pancrea
19	chr6:131255800-131276200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:131255800-131277400	Weak transcription	Psoas Muscle	Psoas
21	chr6:131256000-131263000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:131256000-131279400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:131256600-131265200	Weak transcription	Aorta	Aorta
24	chr6:131257200-131264600	Weak transcription	Fetal Intestine Large	intestine
25	chr6:131257200-131270200	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:131257400-131264800	Weak transcription	Adipose Nuclei	Adipose
27	chr6:131257400-131281800	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:131257800-131261200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr6:131258200-131265600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:131258400-131264800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:131258400-131264800	Weak transcription	Fetal Lung	lung
32	chr6:131258400-131265000	Weak transcription	Ovary	ovary
33	chr6:131258400-131265600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:131258400-131265600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:131258400-131265600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:131258400-131265800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr6:131259600-131264600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:131259800-131264600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:131259800-131264600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:131259800-131264800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:131259800-131264800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr6:131259800-131265000	Weak transcription	NHLF	lung
43	chr6:131259800-131265600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:131259800-131265800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:131259800-131268200	Weak transcription	HSMM	muscle
46	chr6:131260000-131261000	Weak transcription	NHDF-Ad	bronchial
47	chr6:131260000-131262600	Weak transcription	Brain Angular Gyrus	brain
48	chr6:131260000-131264200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:131260000-131264600	Weak transcription	Brain Anterior Caudate	brain
50	chr6:131260000-131264600	Weak transcription	Brain Hippocampus Middle	brain

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