Variant report

Variant	rs3798251
Chromosome Location	chr6:131255106-131255107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:131252764..131256680-chr6:131257995..131261585,5	K562	blood:
2	chr6:131251571..131254129-chr6:131255029..131257491,2	K562	blood:
3	chr6:131250056..131252912-chr6:131253561..131255639,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10499177	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11969461	0.91[CHB][hapmap]
rs12527605	0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12528626	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12529894	1.00[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12660135	0.89[ASN][1000 genomes]
rs12661651	0.92[CEU][hapmap];0.89[ASN][1000 genomes]
rs12663183	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1332492	0.91[CHB][hapmap]
rs17059678	0.84[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17059736	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17059852	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17832366	0.84[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs1855078	0.91[CHB][hapmap]
rs2008593	0.84[CHB][hapmap]
rs2327006	0.91[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs3777452	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777464	0.94[TSI][hapmap];0.82[AMR][1000 genomes]
rs4513821	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs67836126	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6923182	0.91[CHB][hapmap]
rs6927047	0.82[CHB][hapmap]
rs6941909	0.90[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72985722	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72998266	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73000206	0.91[ASN][1000 genomes]
rs73000216	0.95[ASN][1000 genomes]
rs73000246	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73000272	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs915171	0.86[JPT][hapmap]
rs928592	1.00[JPT][hapmap]
rs9321258	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9483193	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9483194	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9483195	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9492759	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9492762	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9492763	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9492768	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9492776	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9492782	0.91[CHB][hapmap]
rs9492784	0.91[CHB][hapmap]
rs9492785	0.91[CHB][hapmap]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
3	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:131249000-131259000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:131250800-131255600	Weak transcription	Pancreas	Pancrea
7	chr6:131251200-131268200	Weak transcription	Right Atrium	heart
8	chr6:131251800-131256200	Weak transcription	Aorta	Aorta
9	chr6:131253000-131272800	Weak transcription	Dnd41	blood
10	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
11	chr6:131253400-131256200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:131253600-131255200	Enhancers	Brain Angular Gyrus	brain
13	chr6:131253600-131255200	Enhancers	Fetal Lung	lung
14	chr6:131253600-131257000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:131253600-131257400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:131253600-131257400	Enhancers	Adipose Nuclei	Adipose
17	chr6:131253800-131255400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:131253800-131255400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:131253800-131255800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:131253800-131255800	Enhancers	Psoas Muscle	Psoas
21	chr6:131253800-131256000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:131253800-131256600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:131253800-131256600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr6:131253800-131257200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:131253800-131257600	Enhancers	Osteobl	bone
26	chr6:131254000-131255200	Enhancers	H9 Cell Line	embryonic stem cell
27	chr6:131254000-131255200	Enhancers	Colon Smooth Muscle	Colon
28	chr6:131254000-131255400	Enhancers	Ovary	ovary
29	chr6:131254000-131255600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr6:131254000-131255800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:131254000-131255800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:131254000-131257200	Enhancers	Fetal Muscle Leg	muscle
33	chr6:131254000-131258200	Enhancers	NHLF	lung
34	chr6:131254200-131255200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:131254200-131255200	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr6:131254200-131255400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr6:131254200-131255400	Enhancers	Fetal Intestine Large	intestine
38	chr6:131254200-131255400	Enhancers	Rectal Smooth Muscle	rectum
39	chr6:131254200-131255800	Enhancers	Fetal Intestine Small	intestine
40	chr6:131254200-131255800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr6:131254200-131257400	Enhancers	HSMM	muscle
42	chr6:131254200-131258200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:131254400-131257400	Enhancers	Muscle Satellite Cultured Cells	--
44	chr6:131254600-131255200	Enhancers	Left Ventricle	heart
45	chr6:131254800-131255200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:131254800-131255200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:131254800-131255200	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr6:131254800-131255200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:131254800-131255200	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr6:131254800-131255200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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