Variant report

Variant	rs17059852
Chromosome Location	chr6:131269932-131269933
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10499177	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11969461	0.91[CHB][hapmap]
rs12527605	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12528626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12529894	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12660135	0.82[ASN][1000 genomes]
rs12661651	0.85[CEU][hapmap];0.82[ASN][1000 genomes]
rs12663183	0.92[CEU][hapmap];0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs1332492	0.91[CHB][hapmap]
rs17059678	0.92[CEU][hapmap];0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs17059736	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs17832366	0.91[CEU][hapmap]
rs1855078	0.91[CHB][hapmap]
rs2008593	0.84[CHB][hapmap]
rs2020972	0.88[EUR][1000 genomes]
rs2327006	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2327007	0.87[ASN][1000 genomes]
rs3777452	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3777464	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs3798251	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4513821	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs67836126	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6923182	0.91[CHB][hapmap]
rs6927047	0.82[CHB][hapmap]
rs6941909	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72985722	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72987859	0.84[EUR][1000 genomes]
rs72998266	0.85[ASN][1000 genomes]
rs73000206	0.84[ASN][1000 genomes]
rs73000216	0.87[ASN][1000 genomes]
rs73000246	0.91[ASN][1000 genomes]
rs73000272	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs928592	0.86[JPT][hapmap]
rs9321258	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs946349	0.87[ASN][1000 genomes]
rs9483193	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9483194	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9483195	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9492759	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9492762	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9492763	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9492768	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9492776	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9492782	0.91[CHB][hapmap]
rs9492784	0.91[CHB][hapmap]
rs9492785	0.91[CHB][hapmap]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131253000-131272800	Weak transcription	Dnd41	blood
4	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:131255000-131274600	Weak transcription	Fetal Stomach	stomach
6	chr6:131255200-131276000	Weak transcription	Left Ventricle	heart
7	chr6:131255400-131276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
9	chr6:131255800-131276200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:131255800-131277400	Weak transcription	Psoas Muscle	Psoas
11	chr6:131256000-131279400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:131257200-131270200	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:131257400-131281800	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:131260000-131286200	Weak transcription	HSMMtube	muscle
15	chr6:131263600-131272800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:131264800-131277800	Weak transcription	Gastric	stomach
17	chr6:131265600-131276000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:131265800-131274400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:131266000-131272600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:131266000-131275000	Weak transcription	A549	lung
21	chr6:131266000-131280600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:131266000-131283800	Weak transcription	Lung	lung
23	chr6:131266000-131287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:131266600-131274400	Weak transcription	Ovary	ovary
25	chr6:131266800-131270200	Weak transcription	NHEK	skin
26	chr6:131266800-131274400	Weak transcription	Aorta	Aorta
27	chr6:131266800-131277200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:131266800-131287200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:131267000-131270800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:131267000-131286000	Weak transcription	Brain Angular Gyrus	brain
31	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:131267200-131273600	Weak transcription	Fetal Intestine Small	intestine
33	chr6:131267200-131277000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:131267200-131277200	Weak transcription	Small Intestine	intestine
35	chr6:131267200-131281200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr6:131267200-131282200	Weak transcription	Primary B cells from peripheral blood	blood
37	chr6:131267400-131272800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:131267400-131273000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:131267400-131279600	Weak transcription	HMEC	breast
40	chr6:131267400-131280200	Weak transcription	Brain Anterior Caudate	brain
41	chr6:131267400-131281600	Weak transcription	GM12878-XiMat	blood
42	chr6:131267400-131286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:131267400-131287200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:131267600-131273200	Weak transcription	Fetal Lung	lung
45	chr6:131267600-131275600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:131267600-131275600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:131267600-131284000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:131267600-131287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr6:131267800-131273000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr6:131267800-131276000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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