Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10499177	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12527605	0.80[ASN][1000 genomes]
rs12528626	0.95[ASN][1000 genomes]
rs12529894	0.81[ASN][1000 genomes]
rs12660135	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12661651	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12663183	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17059678	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17059736	0.95[ASN][1000 genomes]
rs17059852	0.85[ASN][1000 genomes]
rs3777452	0.95[ASN][1000 genomes]
rs3798251	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4513821	0.93[ASN][1000 genomes]
rs67836126	0.88[ASN][1000 genomes]
rs6927047	0.80[ASN][1000 genomes]
rs6941909	0.84[ASN][1000 genomes]
rs73000206	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs73000216	0.95[ASN][1000 genomes]
rs73000246	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73000272	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321258	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9483193	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9483194	0.95[ASN][1000 genomes]
rs9483195	0.95[ASN][1000 genomes]
rs9492759	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9492762	0.95[ASN][1000 genomes]
rs9492763	0.95[ASN][1000 genomes]
rs9492768	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131159200	Weak transcription	HSMM	muscle
2	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
3	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
4	chr6:131147600-131157800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:131147800-131149400	Enhancers	Pancreas	Pancrea
6	chr6:131148000-131157000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:131148200-131149800	Active TSS	Liver	Liver
8	chr6:131148600-131149200	Bivalent/Poised TSS	HepG2	liver
9	chr6:131148600-131149400	Enhancers	Gastric	stomach
10	chr6:131148600-131150400	Active TSS	Duodenum Mucosa	Duodenum
11	chr6:131148600-131150600	Active TSS	Fetal Intestine Large	intestine
12	chr6:131148600-131151400	Active TSS	Fetal Intestine Small	intestine
13	chr6:131148800-131158000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:131149000-131172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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