Variant report

Variant	rs12528626
Chromosome Location	chr6:131249397-131249398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10499177	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969461	0.91[CHB][hapmap]
rs12527605	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12529894	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12660135	0.91[ASN][1000 genomes]
rs12661651	0.85[CEU][hapmap];0.91[ASN][1000 genomes]
rs12663183	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs1332492	0.91[CHB][hapmap]
rs17059678	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17059736	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17059852	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17832366	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1855078	0.91[CHB][hapmap]
rs2008593	0.84[CHB][hapmap]
rs2327006	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs3777452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777464	0.85[CEU][hapmap];0.84[AMR][1000 genomes]
rs3798251	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4513821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs67836126	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6923182	0.91[CHB][hapmap]
rs6927047	0.82[CHB][hapmap]
rs6941909	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72985722	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72998266	0.95[ASN][1000 genomes]
rs73000206	0.93[ASN][1000 genomes]
rs73000216	0.96[ASN][1000 genomes]
rs73000246	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73000272	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs915171	0.86[JPT][hapmap]
rs928592	1.00[JPT][hapmap]
rs9321258	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483193	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483194	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483195	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492759	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492763	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492768	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492776	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs9492782	0.91[CHB][hapmap]
rs9492784	0.91[CHB][hapmap]
rs9492785	0.91[CHB][hapmap]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:131229600-131249600	Weak transcription	Osteobl	bone
4	chr6:131234000-131250200	Weak transcription	Ovary	ovary
5	chr6:131234000-131250600	Weak transcription	Fetal Stomach	stomach
6	chr6:131234600-131249400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:131234600-131250200	Weak transcription	Pancreas	Pancrea
8	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
10	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:131238400-131249800	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:131238400-131250200	Weak transcription	Aorta	Aorta
13	chr6:131239200-131252600	Weak transcription	Dnd41	blood
14	chr6:131240000-131253600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:131242200-131249600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:131242600-131254800	Weak transcription	Fetal Kidney	kidney
17	chr6:131242800-131255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:131244200-131249400	Weak transcription	NHDF-Ad	bronchial
19	chr6:131244200-131250000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:131244800-131249800	Weak transcription	HSMMtube	muscle
22	chr6:131244800-131255000	Weak transcription	Lung	lung
23	chr6:131245000-131249400	Weak transcription	Small Intestine	intestine
24	chr6:131245000-131249600	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:131245000-131254000	Weak transcription	Left Ventricle	heart
26	chr6:131245000-131254800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:131245400-131249600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:131245400-131249600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:131245400-131253600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:131246200-131249400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:131246200-131249800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:131246200-131252200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr6:131246200-131254200	Weak transcription	Fetal Intestine Large	intestine
34	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:131246600-131249800	Weak transcription	HUVEC	blood vessel
36	chr6:131246600-131254800	Weak transcription	Placenta	Placenta
37	chr6:131246800-131251200	Enhancers	Brain Angular Gyrus	brain
38	chr6:131247000-131249600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr6:131247600-131249400	Weak transcription	NHLF	lung
40	chr6:131247800-131254200	Weak transcription	Fetal Intestine Small	intestine
41	chr6:131248400-131250000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:131248600-131249400	Strong transcription	Fetal Lung	lung
43	chr6:131248600-131251200	Enhancers	Brain Cingulate Gyrus	brain
44	chr6:131248800-131249600	Strong transcription	Fetal Muscle Leg	muscle
45	chr6:131248800-131253800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:131248800-131254200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:131248800-131255000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr6:131249000-131249800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:131249000-131249800	Strong transcription	HSMM	muscle
50	chr6:131249000-131250000	Weak transcription	Brain Anterior Caudate	brain

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