Variant report

Variant	rs12665208
Chromosome Location	chr6:131422253-131422254
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11154614	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11154619	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11961521	0.83[ASN][1000 genomes]
rs11969461	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12198265	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12527605	0.91[CHB][hapmap]
rs12528626	0.83[CHB][hapmap]
rs12529894	0.91[CHB][hapmap]
rs12665101	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13192526	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207929	0.81[ASN][1000 genomes]
rs13208091	0.81[ASN][1000 genomes]
rs13209830	0.81[ASN][1000 genomes]
rs1332492	0.91[CHB][hapmap]
rs1338906	0.81[ASN][1000 genomes]
rs17059852	0.82[CHB][hapmap]
rs1855078	0.91[CHB][hapmap]
rs1977744	0.86[ASN][1000 genomes]
rs2327006	0.91[CHB][hapmap]
rs34445705	0.81[ASN][1000 genomes]
rs35273150	0.81[ASN][1000 genomes]
rs3777452	0.83[CHB][hapmap]
rs3798251	0.82[CHB][hapmap]
rs4513821	0.82[CHB][hapmap]
rs6908768	0.86[ASN][1000 genomes]
rs6923182	0.91[CHB][hapmap]
rs6941909	0.89[CHB][hapmap]
rs72987859	0.81[ASN][1000 genomes]
rs72987891	0.81[ASN][1000 genomes]
rs72989827	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72989829	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7743764	0.81[ASN][1000 genomes]
rs9492762	0.82[CHB][hapmap]
rs9492776	0.91[CHB][hapmap]
rs9492782	0.91[CHB][hapmap]
rs9492784	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs9492785	0.91[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1019112	chr6:131409284-131452300	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761029	chr6:131413789-131452312	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1016925	chr6:131418532-131452300	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131422000-131422400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:131422200-131424000	Enhancers	Rectal Mucosa Donor 29	rectum

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