Variant report
| Variant | rs12665101 |
|---|---|
| Chromosome Location | chr6:131404215-131404216 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11154614 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11154619 | 0.84[ASN][1000 genomes] |
| rs11961521 | 0.92[ASN][1000 genomes] |
| rs11969461 | 0.88[ASN][1000 genomes] |
| rs12198265 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12527232 | 0.85[ASN][1000 genomes] |
| rs12665208 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13192526 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13207929 | 0.89[ASN][1000 genomes] |
| rs13208091 | 0.89[ASN][1000 genomes] |
| rs13209830 | 0.89[ASN][1000 genomes] |
| rs1332492 | 0.88[ASN][1000 genomes] |
| rs1338906 | 0.89[ASN][1000 genomes] |
| rs17180547 | 0.88[ASN][1000 genomes] |
| rs1855078 | 0.88[ASN][1000 genomes] |
| rs1977744 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs34445705 | 0.89[ASN][1000 genomes] |
| rs34863373 | 0.86[ASN][1000 genomes] |
| rs35273150 | 0.89[ASN][1000 genomes] |
| rs6908768 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6923182 | 0.83[ASN][1000 genomes] |
| rs72987859 | 0.89[ASN][1000 genomes] |
| rs72987891 | 0.89[ASN][1000 genomes] |
| rs72989827 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72989829 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7740558 | 0.82[AMR][1000 genomes] |
| rs7743764 | 0.89[ASN][1000 genomes] |
| rs9492784 | 0.89[ASN][1000 genomes] |
| rs9492785 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032955 | chr6:131298803-131818502 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv538443 | chr6:131298803-131818502 | Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv830807 | chr6:131390952-131581931 | Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv10623 | chr6:131397221-131418195 | Active TSS Enhancers ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:131403600-131404400 | Enhancers | Rectal Mucosa Donor 29 | rectum |
