Variant report

Variant	rs11961521
Chromosome Location	chr6:131377176-131377177
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11154614	0.95[ASN][1000 genomes]
rs11154619	0.82[ASN][1000 genomes]
rs11969461	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12198265	0.82[ASN][1000 genomes]
rs12527232	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12665101	0.92[ASN][1000 genomes]
rs12665208	0.83[ASN][1000 genomes]
rs13192526	0.83[ASN][1000 genomes]
rs13207929	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13208091	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13209830	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1332492	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1338906	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17180547	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1855078	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1977744	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34445705	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34863373	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35273150	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66491359	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6908768	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6923182	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72987859	0.97[ASN][1000 genomes]
rs72987891	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72989827	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs72989829	0.95[ASN][1000 genomes]
rs7740558	0.90[AFR][1000 genomes]
rs7743764	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7745206	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9483209	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9492784	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9492785	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9492799	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131373400-131381400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:131373800-131377400	ZNF genes & repeats	Fetal Muscle Leg	muscle
3	chr6:131374000-131377600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:131374400-131378200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:131374600-131377200	ZNF genes & repeats	Fetal Intestine Small	intestine
6	chr6:131374600-131377400	ZNF genes & repeats	Fetal Intestine Large	intestine
7	chr6:131374600-131378000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:131374600-131378000	ZNF genes & repeats	A549	lung
9	chr6:131374800-131377200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr6:131374800-131377200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr6:131374800-131377600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr6:131374800-131378000	ZNF genes & repeats	Dnd41	blood
13	chr6:131374800-131378000	ZNF genes & repeats	HepG2	liver
14	chr6:131374800-131378800	ZNF genes & repeats	Primary B cells from cord blood	blood
15	chr6:131375000-131377200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:131375000-131377400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:131375000-131378000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:131375200-131377400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
19	chr6:131375600-131380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:131375800-131382400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:131376000-131382600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:131376200-131379200	Weak transcription	Osteobl	bone
23	chr6:131376400-131380600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:131376400-131380600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:131376400-131380600	Weak transcription	Fetal Stomach	stomach
26	chr6:131376400-131381800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:131376600-131378800	Weak transcription	Brain Substantia Nigra	brain
28	chr6:131376800-131377200	ZNF genes & repeats	Primary T cells from cord blood	blood
29	chr6:131376800-131380800	Weak transcription	NHLF	lung
30	chr6:131377000-131377200	ZNF genes & repeats	Colon Smooth Muscle	Colon
31	chr6:131377000-131377800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:131377000-131380600	Weak transcription	NHDF-Ad	bronchial
33	chr6:131377000-131381800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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