Variant report

Variant	rs11165149
Chromosome Location	chr1:94951754-94951755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10157506	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1034363	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1041282	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11576665	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11581292	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11582033	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1158254	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11585880	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12120731	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12127355	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12130330	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12131298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12143221	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12143512	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16946	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17410399	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1983859	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2050648	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2147794	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2296382	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2794470	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4148042	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4148050	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4148052	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4148056	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4148060	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4536006	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4847303	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55801886	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56353982	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61772847	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61772851	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61772854	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61772857	0.85[ASN][1000 genomes]
rs698950	0.85[EUR][1000 genomes]
rs7555399	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs841692	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs841695	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs927728	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs966176	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871764	chr1:94917402-95004084	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv531881	chr1:94937444-95053785	Weak transcription Bivalent Enhancer Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94913800-94974200	Weak transcription	Psoas Muscle	Psoas
2	chr1:94914200-94951800	Weak transcription	Brain Angular Gyrus	brain
3	chr1:94914800-94985800	Weak transcription	NHLF	lung
4	chr1:94915400-94993200	Weak transcription	HSMMtube	muscle
5	chr1:94915800-94955400	Weak transcription	NHDF-Ad	bronchial
6	chr1:94915800-94956600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:94916000-94957200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr1:94916000-94969600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:94916000-94970000	Weak transcription	Ovary	ovary
10	chr1:94916000-94970000	Weak transcription	Spleen	Spleen
11	chr1:94916000-94973800	Weak transcription	Pancreas	Pancrea
12	chr1:94916000-94993000	Weak transcription	Esophagus	oesophagus
13	chr1:94916200-94968400	Weak transcription	Gastric	stomach
14	chr1:94916200-94971600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:94916200-94974200	Weak transcription	Lung	lung
16	chr1:94917200-94964400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr1:94917800-94971800	Weak transcription	NHEK	skin
18	chr1:94917800-95000800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:94918000-94957000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr1:94921000-94957800	Weak transcription	Brain Germinal Matrix	brain
21	chr1:94923600-94956400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr1:94923600-94956600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr1:94923800-95000400	Weak transcription	Aorta	Aorta
24	chr1:94924000-94964400	Weak transcription	GM12878-XiMat	blood
25	chr1:94924800-94968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:94929000-94954200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr1:94929000-94957200	Weak transcription	Colonic Mucosa	Colon
28	chr1:94929400-94980200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr1:94929600-94955400	Weak transcription	Fetal Heart	heart
30	chr1:94929600-94985400	Weak transcription	Fetal Brain Female	brain
31	chr1:94930800-94974000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr1:94931000-94952400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr1:94931000-94956600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:94931000-94957400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:94931600-94957200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr1:94931600-94958200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:94931800-94955000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:94931800-94956000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr1:94932200-94955400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr1:94937400-94967000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr1:94937600-94971800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr1:94938600-94958800	Strong transcription	Fetal Thymus	thymus
43	chr1:94942400-94997200	Weak transcription	Right Ventricle	heart
44	chr1:94942600-94954000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr1:94942600-94955800	Weak transcription	Fetal Lung	lung
46	chr1:94942600-94964600	Weak transcription	Colon Smooth Muscle	Colon
47	chr1:94943200-94955400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr1:94943200-94961600	Weak transcription	HUVEC	blood vessel
49	chr1:94943200-94967600	Weak transcription	Fetal Stomach	stomach
50	chr1:94944200-94965800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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