The 2.0 version of rSNPBase

Variant report

Variant rs55801886
Chromosome Location chr1:94909862-94909863
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:21 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94885200-94915000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:94888400-94914600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
3 chr1:94889200-94914200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr1:94894600-94914800 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr1:94899200-94914800 Weak transcription HSMM muscle
6 chr1:94901800-94911200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr1:94904600-94910400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr1:94904600-94910600 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr1:94904600-94914800 Weak transcription Muscle Satellite Cultured Cells --
10 chr1:94906200-94910800 Weak transcription Gastric stomach
11 chr1:94906200-94912000 Weak transcription Colon Smooth Muscle Colon
12 chr1:94906200-94914600 Weak transcription Left Ventricle heart
13 chr1:94906200-94915200 Weak transcription Pancreas Pancrea
14 chr1:94907200-94911400 Weak transcription Liver Liver
15 chr1:94908400-94910000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr1:94908600-94918800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr1:94909000-94910400 ZNF genes & repeats Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr1:94909400-94914800 Weak transcription Fetal Kidney kidney
19 chr1:94909600-94911200 ZNF genes & repeats Thymus Thymus
20 chr1:94909600-94912000 ZNF genes & repeats Fetal Thymus thymus
21 chr1:94909600-94914600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin

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Last update: Aug 31, 2015