Variant report

Variant	rs11174571
Chromosome Location	chr12:63022329-63022330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63000207..63003968-chr12:63019804..63022918,4	MCF-7	breast:
2	chr12:62996090..62998530-chr12:63021670..63024116,3	MCF-7	breast:
3	chr12:63017661..63021132-chr12:63021138..63024799,3	K562	blood:
4	chr12:62999244..63001612-chr12:63021259..63022888,2	K562	blood:

Variant related genes	Relation type
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10877855	0.91[AFR][1000 genomes]
rs10877856	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs10877857	0.81[CEU][hapmap];0.91[AFR][1000 genomes]
rs10877859	0.81[CEU][hapmap];0.91[AFR][1000 genomes]
rs10877862	0.91[AFR][1000 genomes]
rs10877864	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs10877870	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs11174487	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11174494	0.91[AFR][1000 genomes]
rs11174495	0.91[AFR][1000 genomes]
rs11174496	0.83[AFR][1000 genomes]
rs11174498	0.91[AFR][1000 genomes]
rs11174504	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174514	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174518	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174527	0.82[EUR][1000 genomes]
rs11174537	0.83[EUR][1000 genomes]
rs11174557	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11174562	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11174568	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174575	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174576	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11520127	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11613132	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs11614022	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11614822	0.83[EUR][1000 genomes]
rs12367878	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369751	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369961	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12369985	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs12370404	0.82[EUR][1000 genomes]
rs12580567	1.00[CHB][hapmap]
rs17731893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17732089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17732182	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2270732	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55833440	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7296573	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7297093	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7301016	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs7302094	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7302456	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7303825	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7311952	1.00[JPT][hapmap]
rs73124315	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73126004	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73126024	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141045	0.83[EUR][1000 genomes]
rs7962519	0.92[CEU][hapmap];0.91[AFR][1000 genomes]
rs7975109	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62999400-63025000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:63000800-63024200	Weak transcription	Fetal Brain Female	brain
3	chr12:63003200-63023800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:63007800-63024800	Weak transcription	NH-A	brain
5	chr12:63008000-63023600	Weak transcription	NHDF-Ad	bronchial
6	chr12:63010200-63025200	Weak transcription	HSMMtube	muscle
7	chr12:63011600-63023200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:63012400-63023800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:63012600-63023400	Weak transcription	A549	lung
10	chr12:63013800-63025200	Weak transcription	Right Atrium	heart
11	chr12:63016200-63022400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr12:63016400-63022400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:63019400-63022800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:63019400-63025000	Weak transcription	Adipose Nuclei	Adipose
15	chr12:63019600-63025400	Weak transcription	Pancreas	Pancrea
16	chr12:63019800-63022400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr12:63019800-63022400	Weak transcription	Osteobl	bone
18	chr12:63019800-63022600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:63019800-63022600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr12:63019800-63025200	Weak transcription	Liver	Liver
21	chr12:63019800-63025800	Weak transcription	Placenta	Placenta
22	chr12:63020800-63022400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr12:63020800-63023200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr12:63021000-63022600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:63021200-63024000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr12:63021400-63022600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr12:63021400-63025200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr12:63021600-63023400	Weak transcription	Fetal Brain Male	brain
29	chr12:63021800-63024000	Weak transcription	HMEC	breast
30	chr12:63022200-63022800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
31	chr12:63022200-63023200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr12:63022200-63025600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links