Variant report

Variant	rs7297093
Chromosome Location	chr12:63033387-63033388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:62995253..63000922-chr12:63028846..63036538,11	MCF-7	breast:
2	chr12:63031885..63033925-chr12:63071699..63073227,2	MCF-7	breast:
3	chr12:62995975..62997976-chr12:63032491..63035409,2	MCF-7	breast:
4	chr12:62995871..62997574-chr12:63032709..63034792,2	K562	blood:
5	chr12:63026484..63029386-chr12:63031687..63033972,3	MCF-7	breast:
6	chr12:63032737..63035703-chr12:63097424..63099725,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10877855	0.91[AFR][1000 genomes]
rs10877856	1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs10877857	0.91[AFR][1000 genomes]
rs10877859	0.91[AFR][1000 genomes]
rs10877862	0.91[AFR][1000 genomes]
rs10877864	1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174487	1.00[JPT][hapmap]
rs11174494	0.91[AFR][1000 genomes]
rs11174495	0.91[AFR][1000 genomes]
rs11174496	0.83[AFR][1000 genomes]
rs11174498	0.91[AFR][1000 genomes]
rs11174504	1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174514	1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174517	1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174518	1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174557	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11174562	0.91[AFR][1000 genomes]
rs11174568	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11174569	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11174571	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11174575	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11174576	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11520127	1.00[JPT][hapmap]
rs11613132	1.00[JPT][hapmap]
rs11614022	1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs12367878	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12369751	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12369961	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17731893	1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs17732089	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17732182	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2270732	1.00[JPT][hapmap]
rs55833440	0.91[AFR][1000 genomes]
rs7296573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7301016	1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs7302094	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7302456	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7303825	1.00[JPT][hapmap]
rs7311952	1.00[JPT][hapmap]
rs73124315	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73126004	0.91[AFR][1000 genomes]
rs73126024	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7962519	0.83[CEU][hapmap];0.91[AFR][1000 genomes]
rs7975109	1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv53806	chr12:63030522-63033404	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63026600-63034200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:63026600-63049800	Weak transcription	Right Atrium	heart
3	chr12:63027200-63034000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:63030000-63034200	Weak transcription	Osteobl	bone
5	chr12:63030000-63034400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr12:63030000-63038400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:63030000-63040400	Weak transcription	Brain Hippocampus Middle	brain
8	chr12:63030000-63040800	Weak transcription	Brain Angular Gyrus	brain
9	chr12:63030400-63033800	Weak transcription	HepG2	liver
10	chr12:63030400-63034200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr12:63030400-63034400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:63030400-63034600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:63030400-63035000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:63030400-63035400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr12:63030400-63040200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr12:63030400-63040600	Weak transcription	Brain Substantia Nigra	brain
17	chr12:63030400-63040800	Weak transcription	Brain Anterior Caudate	brain
18	chr12:63031600-63041000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr12:63031800-63037000	Weak transcription	Fetal Intestine Small	intestine
20	chr12:63031800-63040200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr12:63031800-63047000	Weak transcription	Liver	Liver
22	chr12:63032000-63034400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr12:63032000-63034800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr12:63032000-63034800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr12:63032000-63035000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr12:63032000-63038400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr12:63032000-63039000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr12:63032200-63034800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr12:63032200-63034800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr12:63032200-63035000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr12:63032400-63034800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr12:63032600-63033800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:63032800-63033600	Enhancers	A549	lung

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