Variant report

Variant	rs73126024
Chromosome Location	chr12:63027764-63027765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63023335..63025225-chr12:63026338..63028730,2	K562	blood:
2	chr12:62994967..62998592-chr12:63024952..63028026,5	MCF-7	breast:
3	chr12:63026484..63029386-chr12:63031687..63033972,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257354	Chromatin interaction
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10877855	0.91[AFR][1000 genomes]
rs10877856	0.91[AFR][1000 genomes]
rs10877857	0.91[AFR][1000 genomes]
rs10877859	0.91[AFR][1000 genomes]
rs10877862	0.91[AFR][1000 genomes]
rs10877864	0.91[AFR][1000 genomes]
rs11174494	0.91[AFR][1000 genomes]
rs11174495	0.91[AFR][1000 genomes]
rs11174496	0.83[AFR][1000 genomes]
rs11174498	0.91[AFR][1000 genomes]
rs11174504	0.91[AFR][1000 genomes]
rs11174514	0.91[AFR][1000 genomes]
rs11174517	0.91[AFR][1000 genomes]
rs11174518	0.91[AFR][1000 genomes]
rs11174537	0.81[EUR][1000 genomes]
rs11174557	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11174562	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11174568	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174569	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174571	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174575	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174576	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11614022	0.91[AFR][1000 genomes]
rs11614822	0.81[EUR][1000 genomes]
rs12367878	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369751	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369961	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17731893	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17732089	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17732182	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55833440	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7296573	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7297093	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7301016	0.91[AFR][1000 genomes]
rs7302094	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7302456	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73124315	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73126004	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73141045	0.81[EUR][1000 genomes]
rs7962519	0.91[AFR][1000 genomes]
rs7975109	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63026600-63028200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:63026600-63028600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:63026600-63032600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:63026600-63034200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:63026600-63049800	Weak transcription	Right Atrium	heart
6	chr12:63026800-63027800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
7	chr12:63026800-63028000	Weak transcription	Liver	Liver
8	chr12:63026800-63029200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:63026800-63029200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr12:63026800-63029400	Weak transcription	Osteobl	bone
11	chr12:63027000-63027800	Weak transcription	Fetal Kidney	kidney
12	chr12:63027000-63028800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:63027000-63028800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr12:63027000-63028800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:63027000-63029200	Weak transcription	Brain Anterior Caudate	brain
16	chr12:63027000-63029200	Weak transcription	Brain Hippocampus Middle	brain
17	chr12:63027000-63029200	Weak transcription	Brain Substantia Nigra	brain
18	chr12:63027000-63029400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr12:63027200-63028800	Weak transcription	HepG2	liver
20	chr12:63027200-63029200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:63027200-63029200	Weak transcription	Brain Angular Gyrus	brain
22	chr12:63027200-63034000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr12:63027400-63027800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
24	chr12:63027600-63027800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr12:63027600-63029000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr12:63027600-63029000	Weak transcription	A549	lung
27	chr12:63027600-63029200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr12:63027600-63029400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr12:63027600-63030600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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