Variant report

Variant	rs11174575
Chromosome Location	chr12:63026392-63026393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63023335..63025225-chr12:63026338..63028730,2	K562	blood:
2	chr12:62995953..62998140-chr12:63024732..63027411,2	MCF-7	breast:
3	chr12:62994967..62998592-chr12:63024952..63028026,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10877855	0.91[AFR][1000 genomes]
rs10877856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs10877857	0.91[AFR][1000 genomes]
rs10877859	0.91[AFR][1000 genomes]
rs10877862	0.91[AFR][1000 genomes]
rs10877864	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174487	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11174494	0.91[AFR][1000 genomes]
rs11174495	0.91[AFR][1000 genomes]
rs11174496	0.83[AFR][1000 genomes]
rs11174498	0.91[AFR][1000 genomes]
rs11174504	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174514	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174518	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11174537	0.81[EUR][1000 genomes]
rs11174557	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11174562	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11174568	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174569	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174571	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174583	0.80[AMR][1000 genomes]
rs11174587	0.80[AMR][1000 genomes]
rs11174588	0.80[AMR][1000 genomes]
rs11520127	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11613132	1.00[JPT][hapmap]
rs11614022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs11614822	0.81[EUR][1000 genomes]
rs12367878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369961	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12369985	1.00[CHB][hapmap]
rs12580567	1.00[CHB][hapmap]
rs17731893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17732089	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17732182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2270732	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55833440	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7296573	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7297093	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7301016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs7302094	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7302456	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7302602	0.80[AMR][1000 genomes]
rs7303825	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7311952	1.00[JPT][hapmap]
rs73124315	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73126004	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73126024	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141045	0.81[EUR][1000 genomes]
rs7962519	0.83[CEU][hapmap];0.91[AFR][1000 genomes]
rs7975109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63022600-63027000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:63024600-63026600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:63025000-63026400	Active TSS	Brain Hippocampus Middle	brain
4	chr12:63025000-63026600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:63025200-63026400	Active TSS	Brain Angular Gyrus	brain
6	chr12:63025200-63026400	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr12:63025200-63026400	Active TSS	Colon Smooth Muscle	Colon
8	chr12:63025200-63026400	Active TSS	Ovary	ovary
9	chr12:63025200-63026400	Active TSS	Right Atrium	heart
10	chr12:63025200-63026600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
11	chr12:63025200-63026600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr12:63025200-63026600	Flanking Active TSS	HMEC	breast
13	chr12:63025200-63026800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:63025400-63026400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr12:63025400-63026400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr12:63025400-63026400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr12:63025400-63026400	Active TSS	Aorta	Aorta
18	chr12:63025400-63026400	Active TSS	Brain Cingulate Gyrus	brain
19	chr12:63025400-63026400	Active TSS	Fetal Brain Female	brain
20	chr12:63025400-63026400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
21	chr12:63025400-63026400	Active TSS	Left Ventricle	heart
22	chr12:63025400-63026400	Active TSS	Pancreas	Pancrea
23	chr12:63025400-63026400	Active TSS	Rectal Smooth Muscle	rectum
24	chr12:63025400-63026400	Active TSS	A549	lung
25	chr12:63025400-63026400	Active TSS	HSMM	muscle
26	chr12:63025400-63026400	Active TSS	NHDF-Ad	bronchial
27	chr12:63025400-63026600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
28	chr12:63025400-63026600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr12:63025400-63026600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
30	chr12:63025400-63026600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
31	chr12:63025400-63026600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
32	chr12:63025400-63026600	Active TSS	Brain Substantia Nigra	brain
33	chr12:63025400-63026600	Active TSS	Fetal Kidney	kidney
34	chr12:63025400-63026600	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr12:63025400-63026600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
36	chr12:63025400-63026600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
37	chr12:63025400-63026600	Flanking Bivalent TSS/Enh	Thymus	Thymus
38	chr12:63025400-63026600	Flanking Active TSS	HUVEC	blood vessel
39	chr12:63025400-63026800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
40	chr12:63025400-63026800	Flanking Active TSS	NHEK	skin
41	chr12:63025400-63027000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
42	chr12:63025600-63026400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
43	chr12:63025600-63026400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
44	chr12:63025600-63026400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr12:63025600-63026400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
46	chr12:63025600-63026400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
47	chr12:63025600-63026400	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
48	chr12:63025600-63026400	Active TSS	Brain Anterior Caudate	brain
49	chr12:63025600-63026400	Active TSS	Esophagus	oesophagus
50	chr12:63025600-63026400	Active TSS	Gastric	stomach

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