Variant report

Variant	rs11174576
Chromosome Location	chr12:63026436-63026437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63023335..63025225-chr12:63026338..63028730,2	K562	blood:
2	chr12:62995953..62998140-chr12:63024732..63027411,2	MCF-7	breast:
3	chr12:62994967..62998592-chr12:63024952..63028026,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199179	Chromatin interaction
ENSG00000221949	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11174537	0.81[EUR][1000 genomes]
rs11174557	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11174562	1.00[ASN][1000 genomes]
rs11174568	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174569	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174571	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174583	0.80[AMR][1000 genomes]
rs11174587	0.80[AMR][1000 genomes]
rs11174588	0.80[AMR][1000 genomes]
rs11614822	0.81[EUR][1000 genomes]
rs12367878	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369751	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369961	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17731893	1.00[ASN][1000 genomes]
rs17732089	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17732182	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55833440	1.00[ASN][1000 genomes]
rs7296573	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7297093	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7302094	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7302456	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7302602	0.80[AMR][1000 genomes]
rs73124315	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73126004	0.83[ASN][1000 genomes]
rs73126024	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141045	0.81[EUR][1000 genomes]
rs7975109	0.87[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63022600-63027000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:63024600-63026600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:63025000-63026600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:63025200-63026600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
5	chr12:63025200-63026600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:63025200-63026600	Flanking Active TSS	HMEC	breast
7	chr12:63025200-63026800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:63025400-63026600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr12:63025400-63026600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr12:63025400-63026600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
11	chr12:63025400-63026600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
12	chr12:63025400-63026600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
13	chr12:63025400-63026600	Active TSS	Brain Substantia Nigra	brain
14	chr12:63025400-63026600	Active TSS	Fetal Kidney	kidney
15	chr12:63025400-63026600	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr12:63025400-63026600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
17	chr12:63025400-63026600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
18	chr12:63025400-63026600	Flanking Bivalent TSS/Enh	Thymus	Thymus
19	chr12:63025400-63026600	Flanking Active TSS	HUVEC	blood vessel
20	chr12:63025400-63026800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
21	chr12:63025400-63026800	Flanking Active TSS	NHEK	skin
22	chr12:63025400-63027000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
23	chr12:63025600-63026600	Active TSS	H9 Cell Line	embryonic stem cell
24	chr12:63025600-63026600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
25	chr12:63025600-63026600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
26	chr12:63025600-63026600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
27	chr12:63025600-63026600	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
28	chr12:63025600-63026600	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
29	chr12:63025600-63026600	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr12:63025600-63026600	Active TSS	HepG2	liver
31	chr12:63025600-63026800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr12:63025600-63026800	Flanking Active TSS	Liver	Liver
33	chr12:63025600-63026800	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
34	chr12:63025800-63026600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr12:63025800-63026600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr12:63025800-63026600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr12:63025800-63026800	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr12:63025800-63026800	Enhancers	Spleen	Spleen
39	chr12:63025800-63026800	Flanking Active TSS	Osteobl	bone
40	chr12:63026000-63026600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
41	chr12:63026000-63026600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr12:63026000-63026600	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
43	chr12:63026000-63026600	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr12:63026000-63026600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr12:63026000-63026600	Flanking Active TSS	Colonic Mucosa	Colon
46	chr12:63026000-63026600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
47	chr12:63026000-63026600	Flanking Active TSS	Lung	lung
48	chr12:63026000-63026600	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
49	chr12:63026000-63026800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
50	chr12:63026000-63026800	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood

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