Variant report

Variant	rs11174615
Chromosome Location	chr12:63103040-63103041
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63097572..63099203-chr12:63101470..63104150,2	MCF-7	breast:
2	chr12:63094962..63097559-chr12:63102121..63103978,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10877908	0.83[EUR][1000 genomes]
rs10877909	0.83[EUR][1000 genomes]
rs11174616	1.00[ASN][1000 genomes]
rs11174619	0.89[ASN][1000 genomes]
rs61919545	1.00[ASN][1000 genomes]
rs61919552	1.00[ASN][1000 genomes]
rs61919553	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61919554	1.00[ASN][1000 genomes]
rs6581458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7133424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7136083	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7306967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr12:63087200-63113600	Weak transcription	Liver	Liver
4	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
5	chr12:63097000-63105600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:63097000-63118800	Weak transcription	Stomach Mucosa	stomach
7	chr12:63097400-63105200	Weak transcription	Fetal Kidney	kidney
8	chr12:63097600-63104400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:63097600-63105000	Weak transcription	Colon Smooth Muscle	Colon
10	chr12:63097600-63109400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr12:63097600-63109400	Weak transcription	Fetal Intestine Large	intestine
12	chr12:63097800-63104800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:63097800-63108400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr12:63097800-63111600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr12:63097800-63114400	Weak transcription	Aorta	Aorta
16	chr12:63098000-63105200	Weak transcription	Fetal Brain Male	brain
17	chr12:63098000-63107000	Weak transcription	Brain Anterior Caudate	brain
18	chr12:63098200-63104000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:63098200-63104400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr12:63098200-63107800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr12:63098200-63108400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr12:63098600-63103800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr12:63098600-63105000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr12:63098600-63105400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr12:63098600-63108200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr12:63098600-63115600	Strong transcription	HepG2	liver
27	chr12:63098800-63104000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr12:63099000-63103800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr12:63099000-63103800	Weak transcription	NHEK	skin
30	chr12:63099000-63108200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr12:63099200-63105000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr12:63099400-63108600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr12:63099800-63104200	Weak transcription	Fetal Intestine Small	intestine
34	chr12:63100200-63108200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr12:63100600-63103200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr12:63101200-63105600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr12:63101600-63103600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr12:63102200-63103200	Enhancers	Right Atrium	heart
39	chr12:63102200-63103400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr12:63102200-63105800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr12:63102200-63106400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr12:63102200-63106800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr12:63102400-63103400	Enhancers	Fetal Thymus	thymus
44	chr12:63102400-63107200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr12:63102600-63103200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr12:63102600-63103200	Enhancers	Brain Cingulate Gyrus	brain
47	chr12:63102600-63103400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr12:63102600-63103400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr12:63102600-63103400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr12:63102600-63103400	Enhancers	Fetal Muscle Leg	muscle

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