Variant report

Variant	rs10877908
Chromosome Location	chr12:63079795-63079796
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63077645..63079801-chr12:63080578..63082441,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10877909	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174615	0.83[EUR][1000 genomes]
rs11174616	1.00[CEU][hapmap]
rs11174619	1.00[CEU][hapmap]
rs2078234	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61919542	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6581458	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7133424	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7135102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7136083	1.00[CEU][hapmap]
rs7306967	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527742	chr12:63078183-63084312	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63068800-63102800	Weak transcription	Right Ventricle	heart
3	chr12:63069400-63096600	Weak transcription	Fetal Kidney	kidney
4	chr12:63071400-63083200	Weak transcription	Gastric	stomach
5	chr12:63071400-63087000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:63071600-63079800	Weak transcription	Fetal Intestine Large	intestine
7	chr12:63071600-63087000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:63071600-63096400	Weak transcription	Left Ventricle	heart
9	chr12:63072000-63082000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr12:63072000-63082400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr12:63072000-63089200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr12:63074000-63086200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr12:63074200-63092000	Strong transcription	HepG2	liver
14	chr12:63074600-63096400	Weak transcription	Pancreas	Pancrea
15	chr12:63075600-63081400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr12:63076200-63081200	Enhancers	Fetal Muscle Leg	muscle
17	chr12:63076200-63081400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr12:63077400-63080200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr12:63077800-63080600	Weak transcription	Fetal Intestine Small	intestine
20	chr12:63077800-63086600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr12:63077800-63095400	Weak transcription	Placenta	Placenta
22	chr12:63078000-63081000	Weak transcription	HSMMtube	muscle
23	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr12:63078200-63081000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr12:63078200-63082600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:63078200-63083000	Weak transcription	A549	lung
27	chr12:63078200-63083200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr12:63078200-63087200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr12:63078200-63087200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr12:63078200-63091600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr12:63078600-63085000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr12:63078600-63085000	Weak transcription	Brain Angular Gyrus	brain
33	chr12:63078600-63085600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:63078600-63086000	Weak transcription	NH-A	brain
35	chr12:63078800-63081600	Enhancers	NHDF-Ad	bronchial
36	chr12:63078800-63082800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr12:63078800-63084000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr12:63078800-63086600	Weak transcription	Fetal Brain Male	brain
39	chr12:63078800-63087400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr12:63078800-63088200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr12:63079000-63080200	Weak transcription	Aorta	Aorta
42	chr12:63079000-63083000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr12:63079000-63087800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr12:63079000-63088000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr12:63079000-63096400	Weak transcription	Ovary	ovary
46	chr12:63079200-63080200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr12:63079200-63080600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr12:63079200-63081400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr12:63079200-63082000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr12:63079200-63082600	Weak transcription	Brain Anterior Caudate	brain

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