Variant report

Variant	rs2078234
Chromosome Location	chr12:63089315-63089316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63083624..63086955-chr12:63088722..63092795,3	MCF-7	breast:
2	chr12:63087268..63091383-chr12:63091807..63093809,4	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10877908	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10877909	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11174616	1.00[CEU][hapmap]
rs11174619	1.00[CEU][hapmap]
rs61919542	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6581458	1.00[CEU][hapmap]
rs7133424	1.00[CEU][hapmap]
rs7135102	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7136083	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63068800-63102800	Weak transcription	Right Ventricle	heart
3	chr12:63069400-63096600	Weak transcription	Fetal Kidney	kidney
4	chr12:63071600-63096400	Weak transcription	Left Ventricle	heart
5	chr12:63074200-63092000	Strong transcription	HepG2	liver
6	chr12:63074600-63096400	Weak transcription	Pancreas	Pancrea
7	chr12:63077800-63095400	Weak transcription	Placenta	Placenta
8	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr12:63078200-63091600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr12:63079000-63096400	Weak transcription	Ovary	ovary
11	chr12:63079200-63095000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr12:63080000-63096400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr12:63080000-63096400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr12:63080800-63089400	Weak transcription	Thymus	Thymus
15	chr12:63081200-63093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr12:63082400-63091200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr12:63083600-63091400	Weak transcription	Adipose Nuclei	Adipose
18	chr12:63083800-63094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr12:63083800-63103000	Weak transcription	Gastric	stomach
20	chr12:63084000-63092000	Weak transcription	Brain Anterior Caudate	brain
21	chr12:63084400-63095000	Weak transcription	Brain Hippocampus Middle	brain
22	chr12:63085200-63095000	Weak transcription	Brain Substantia Nigra	brain
23	chr12:63085400-63095000	Weak transcription	Brain Angular Gyrus	brain
24	chr12:63086000-63092000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr12:63086200-63089800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:63086400-63089600	Enhancers	NHLF	lung
27	chr12:63086800-63095200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr12:63087000-63095400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr12:63087200-63090400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr12:63087200-63091800	Weak transcription	HMEC	breast
31	chr12:63087200-63095600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr12:63087200-63113600	Weak transcription	Liver	Liver
33	chr12:63087400-63091800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr12:63087400-63095400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr12:63087400-63097200	Weak transcription	Fetal Intestine Large	intestine
36	chr12:63087600-63091400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr12:63087600-63095000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr12:63087600-63095000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr12:63087600-63096400	Weak transcription	Aorta	Aorta
40	chr12:63087600-63096800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr12:63087800-63089400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr12:63087800-63090200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr12:63087800-63090800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr12:63087800-63091200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr12:63087800-63091200	Weak transcription	Right Atrium	heart
46	chr12:63087800-63091200	Weak transcription	NHDF-Ad	bronchial
47	chr12:63087800-63091800	Weak transcription	HSMM	muscle
48	chr12:63087800-63091800	Weak transcription	HSMMtube	muscle
49	chr12:63087800-63092000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr12:63087800-63096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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