Variant report

Variant	rs7133424
Chromosome Location	chr12:63096231-63096232
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63094962..63097559-chr12:63102121..63103978,2	MCF-7	breast:
2	chr12:63092260..63094911-chr12:63095834..63100024,3	MCF-7	breast:
3	chr12:62996063..62998994-chr12:63094952..63099906,5	MCF-7	breast:
4	chr12:62996695..62998472-chr12:63095072..63097500,2	K562	blood:
5	chr12:62995577..62998816-chr12:63091138..63096453,5	MCF-7	breast:
6	chr12:63039398..63042181-chr12:63096184..63099134,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10877908	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10877909	0.83[EUR][1000 genomes]
rs11174615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11174616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs11174619	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2078234	1.00[CEU][hapmap]
rs61919545	0.89[ASN][1000 genomes]
rs61919552	0.89[ASN][1000 genomes]
rs61919553	0.89[ASN][1000 genomes]
rs61919554	0.89[ASN][1000 genomes]
rs6581458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7135102	1.00[CEU][hapmap]
rs7136083	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7306967	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63068800-63102800	Weak transcription	Right Ventricle	heart
3	chr12:63069400-63096600	Weak transcription	Fetal Kidney	kidney
4	chr12:63071600-63096400	Weak transcription	Left Ventricle	heart
5	chr12:63074600-63096400	Weak transcription	Pancreas	Pancrea
6	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr12:63079000-63096400	Weak transcription	Ovary	ovary
8	chr12:63080000-63096400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:63080000-63096400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr12:63083800-63103000	Weak transcription	Gastric	stomach
11	chr12:63087200-63113600	Weak transcription	Liver	Liver
12	chr12:63087400-63097200	Weak transcription	Fetal Intestine Large	intestine
13	chr12:63087600-63096400	Weak transcription	Aorta	Aorta
14	chr12:63087600-63096800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr12:63087800-63096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:63087800-63096600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr12:63087800-63096800	Weak transcription	Fetal Intestine Small	intestine
18	chr12:63088200-63096400	Weak transcription	Fetal Stomach	stomach
19	chr12:63089800-63096800	Weak transcription	Primary T cells from cord blood	blood
20	chr12:63090800-63099000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr12:63091000-63099400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr12:63091200-63096600	Enhancers	NHDF-Ad	bronchial
23	chr12:63092000-63096800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr12:63092200-63096400	Weak transcription	Right Atrium	heart
25	chr12:63092400-63096400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr12:63092400-63096400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr12:63092400-63096400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr12:63092400-63096400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr12:63093600-63098600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr12:63094200-63096400	Weak transcription	Fetal Thymus	thymus
31	chr12:63094200-63098600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr12:63094800-63097600	Enhancers	Brain Cingulate Gyrus	brain
33	chr12:63094800-63098400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr12:63095000-63096600	Enhancers	Brain Angular Gyrus	brain
35	chr12:63095000-63098000	Enhancers	Brain Anterior Caudate	brain
36	chr12:63095000-63098200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr12:63095000-63098200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:63095000-63098200	Enhancers	Brain Hippocampus Middle	brain
39	chr12:63095000-63098200	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr12:63095000-63098200	Enhancers	Brain Substantia Nigra	brain
41	chr12:63095000-63098800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr12:63095000-63100200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr12:63095200-63096400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr12:63095200-63096400	Enhancers	NH-A	brain
45	chr12:63095200-63097800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr12:63095200-63098200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr12:63095200-63098200	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr12:63095200-63098400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr12:63095400-63096600	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr12:63095400-63096600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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