Variant report

Variant	rs7136083
Chromosome Location	chr12:63101701-63101702
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63086305..63088144-chr12:63100380..63102991,2	MCF-7	breast:
2	chr12:62997022..62999901-chr12:63101126..63102981,2	K562	blood:
3	chr12:63097572..63099203-chr12:63101470..63104150,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10877908	1.00[CEU][hapmap]
rs11174615	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11174619	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2078234	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs61919542	0.86[EUR][1000 genomes]
rs61919545	0.96[ASN][1000 genomes]
rs61919552	0.96[ASN][1000 genomes]
rs61919553	0.96[ASN][1000 genomes]
rs61919554	0.96[ASN][1000 genomes]
rs6581458	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7133424	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7135080	0.82[JPT][hapmap]
rs7135102	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7306967	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63068800-63102800	Weak transcription	Right Ventricle	heart
3	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr12:63083800-63103000	Weak transcription	Gastric	stomach
5	chr12:63087200-63113600	Weak transcription	Liver	Liver
6	chr12:63096400-63101800	Enhancers	Fetal Thymus	thymus
7	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
8	chr12:63097000-63105600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:63097000-63118800	Weak transcription	Stomach Mucosa	stomach
10	chr12:63097400-63105200	Weak transcription	Fetal Kidney	kidney
11	chr12:63097600-63102600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr12:63097600-63102600	Weak transcription	Ovary	ovary
13	chr12:63097600-63104400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:63097600-63105000	Weak transcription	Colon Smooth Muscle	Colon
15	chr12:63097600-63109400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr12:63097600-63109400	Weak transcription	Fetal Intestine Large	intestine
17	chr12:63097800-63102000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr12:63097800-63102200	Weak transcription	Right Atrium	heart
19	chr12:63097800-63102800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr12:63097800-63102800	Weak transcription	Fetal Lung	lung
21	chr12:63097800-63102800	Weak transcription	Left Ventricle	heart
22	chr12:63097800-63103000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr12:63097800-63104800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr12:63097800-63108400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr12:63097800-63111600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr12:63097800-63114400	Weak transcription	Aorta	Aorta
27	chr12:63098000-63102800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr12:63098000-63105200	Weak transcription	Fetal Brain Male	brain
29	chr12:63098000-63107000	Weak transcription	Brain Anterior Caudate	brain
30	chr12:63098200-63102800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr12:63098200-63102800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr12:63098200-63102800	Weak transcription	Adipose Nuclei	Adipose
33	chr12:63098200-63102800	Weak transcription	Brain Substantia Nigra	brain
34	chr12:63098200-63104000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr12:63098200-63104400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr12:63098200-63107800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr12:63098200-63108400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr12:63098400-63102600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr12:63098400-63102800	Weak transcription	HSMM	muscle
40	chr12:63098600-63102600	Weak transcription	Fetal Muscle Leg	muscle
41	chr12:63098600-63102800	Weak transcription	Lung	lung
42	chr12:63098600-63103000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr12:63098600-63103000	Weak transcription	Fetal Stomach	stomach
44	chr12:63098600-63103800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr12:63098600-63105000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr12:63098600-63105400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr12:63098600-63108200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr12:63098600-63115600	Strong transcription	HepG2	liver
49	chr12:63098800-63101800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr12:63098800-63102800	Weak transcription	NHLF	lung

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