Variant report

Variant	rs11174619
Chromosome Location	chr12:63110210-63110211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63109891..63111747-chr12:63113408..63114988,2	K562	blood:
2	chr12:63108771..63111747-chr12:63112555..63114988,2	K562	blood:

Variant related genes	Relation type
ENSG00000111110	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10877908	1.00[CEU][hapmap]
rs11174615	0.89[ASN][1000 genomes]
rs11174616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs11174620	0.83[JPT][hapmap]
rs2078234	1.00[CEU][hapmap]
rs61919545	0.89[ASN][1000 genomes]
rs61919552	0.89[ASN][1000 genomes]
rs61919553	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs61919554	0.89[ASN][1000 genomes]
rs6581458	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs7133424	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7135102	1.00[CEU][hapmap]
rs7136083	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7296323	1.00[TSI][hapmap]
rs7306967	0.87[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr12:63087200-63113600	Weak transcription	Liver	Liver
4	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
5	chr12:63097000-63118800	Weak transcription	Stomach Mucosa	stomach
6	chr12:63097800-63111600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:63097800-63114400	Weak transcription	Aorta	Aorta
8	chr12:63098600-63115600	Strong transcription	HepG2	liver
9	chr12:63103000-63112800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:63103200-63112800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr12:63103200-63114400	Weak transcription	Right Ventricle	heart
12	chr12:63103400-63118800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr12:63103800-63112400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr12:63104000-63112000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:63104400-63118800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr12:63104800-63112000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr12:63105000-63111200	Enhancers	Colon Smooth Muscle	Colon
18	chr12:63105400-63115200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:63105800-63114600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr12:63106200-63110400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:63106600-63110800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr12:63107200-63112000	Enhancers	Brain Substantia Nigra	brain
23	chr12:63107200-63113000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr12:63107200-63125000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr12:63107400-63112800	Weak transcription	Placenta	Placenta
26	chr12:63107600-63112000	Enhancers	Fetal Kidney	kidney
27	chr12:63108400-63111000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:63108600-63110600	Weak transcription	Osteobl	bone
29	chr12:63108600-63111400	Enhancers	NH-A	brain
30	chr12:63108800-63112800	Weak transcription	HSMM	muscle
31	chr12:63108800-63114400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr12:63109000-63112400	Weak transcription	HSMMtube	muscle
33	chr12:63109200-63110400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr12:63109200-63110600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr12:63109200-63112200	Enhancers	Brain Hippocampus Middle	brain
36	chr12:63109200-63113800	Weak transcription	NHLF	lung
37	chr12:63109200-63114400	Weak transcription	Lung	lung
38	chr12:63109200-63114400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr12:63109200-63114800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr12:63109200-63122200	Weak transcription	Gastric	stomach
41	chr12:63109400-63110800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr12:63109400-63110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr12:63109400-63111000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr12:63109400-63112800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr12:63109400-63112800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr12:63109400-63112800	Weak transcription	Left Ventricle	heart
47	chr12:63109400-63113800	Weak transcription	Right Atrium	heart
48	chr12:63109400-63114400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr12:63109400-63117600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr12:63109600-63110600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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