Variant report

Variant	rs11186755
Chromosome Location	chr10:93693305-93693306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93691902..93694327-chr10:93711843..93714678,2	MCF-7	breast:
2	chr10:93682327..93685380-chr10:93690100..93694062,4	K562	blood:
3	chr10:93685141..93688099-chr10:93690647..93693379,2	MCF-7	breast:
4	chr10:93688641..93690594-chr10:93691267..93693874,2	K562	blood:
5	chr10:93688393..93689906-chr10:93691732..93693432,2	MCF-7	breast:
6	chr10:93681915..93684932-chr10:93689132..93694686,7	MCF-7	breast:
7	chr10:93692187..93693763-chr10:93702368..93703913,2	MCF-7	breast:
8	chr10:93691329..93694139-chr10:93698403..93701302,2	K562	blood:
9	chr10:93691319..93694139-chr10:93697959..93699903,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11186768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1137825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11592774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11598321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11598436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1229579	1.00[YRI][hapmap]
rs12413858	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12415793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12416560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12569736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12571564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12763600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12766605	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12771773	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12774295	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12774665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12779538	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12780724	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1340421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1474051	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1581239	0.83[ASN][1000 genomes]
rs1626927	0.83[ASN][1000 genomes]
rs1711842	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1711846	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1711858	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1776209	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1776210	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2252204	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2676802	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2676808	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2676809	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2676814	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2676817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2676819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2676820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2676822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2676825	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2792018	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2792022	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2792025	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2797639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2797647	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2995545	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2995546	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34364047	0.94[ASN][1000 genomes]
rs3814639	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814640	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4375360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4933705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933706	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7904126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7909492	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833366	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs833367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs833370	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs833372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs833373	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs833374	0.86[ASN][1000 genomes]
rs833375	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs833378	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs833384	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs833385	1.00[YRI][hapmap]
rs855563	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs855702	1.00[YRI][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684200-93694000	Weak transcription	Esophagus	oesophagus
2	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:93685000-93695600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:93685000-93695800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:93685000-93696000	Weak transcription	Aorta	Aorta
6	chr10:93685000-93696000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:93685000-93696400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:93685000-93703600	Weak transcription	Colonic Mucosa	Colon
9	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
11	chr10:93685200-93694400	Weak transcription	Fetal Kidney	kidney
12	chr10:93685200-93695400	Weak transcription	NH-A	brain
13	chr10:93685800-93695400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
15	chr10:93686000-93694200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:93686000-93695000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:93686600-93694000	Weak transcription	Thymus	Thymus
18	chr10:93686600-93694200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:93686600-93696000	Weak transcription	Brain Germinal Matrix	brain
20	chr10:93686800-93694200	Weak transcription	HMEC	breast
21	chr10:93686800-93695000	Weak transcription	Hela-S3	cervix
22	chr10:93686800-93695200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:93687000-93695200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:93688800-93711400	Weak transcription	Fetal Brain Male	brain
25	chr10:93689200-93719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr10:93690000-93709600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:93690400-93696000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr10:93690600-93698600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:93690600-93702800	Strong transcription	Fetal Thymus	thymus
30	chr10:93690800-93704000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
32	chr10:93691000-93695000	Weak transcription	HUVEC	blood vessel
33	chr10:93691000-93695800	Weak transcription	NHDF-Ad	bronchial
34	chr10:93691000-93697600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr10:93691000-93709600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:93691200-93693400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
37	chr10:93691200-93696000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr10:93691400-93698000	Strong transcription	A549	lung
39	chr10:93691400-93698400	Strong transcription	HSMM	muscle
40	chr10:93691400-93702000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr10:93691600-93696200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:93691800-93694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:93691800-93695000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:93691800-93695200	Weak transcription	HepG2	liver
45	chr10:93691800-93695800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr10:93691800-93695800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:93691800-93696000	Weak transcription	Gastric	stomach
48	chr10:93691800-93696800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:93691800-93707400	Strong transcription	Dnd41	blood
50	chr10:93691800-93716600	Weak transcription	NHLF	lung

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