Variant report

Variant	rs12771773
Chromosome Location	chr10:93685434-93685435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93517264..93519065-chr10:93684545..93687279,2	MCF-7	breast:
2	chr10:93685141..93688099-chr10:93690647..93693379,2	MCF-7	breast:
3	chr10:93660215..93662706-chr10:93684355..93686747,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11186755	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186768	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1137825	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11592774	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11598321	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11598436	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12413858	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12415793	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12416560	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12569736	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12571564	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12763600	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12766605	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12774295	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12774665	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12779538	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12780724	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1340421	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1437	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1474051	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1581239	0.82[ASN][1000 genomes]
rs1626927	0.82[ASN][1000 genomes]
rs1711842	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1711846	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1711858	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1776210	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2252204	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2676802	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2676808	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2676809	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2676814	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2676817	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2676819	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2676820	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2676822	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2676825	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2792018	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2792022	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2792025	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2797639	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2797647	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2995545	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2995546	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34364047	0.96[ASN][1000 genomes]
rs3814639	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814640	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4375360	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933224	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933705	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933706	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933707	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7904126	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7909492	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs833366	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs833367	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs833370	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs833372	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs833373	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs833374	0.85[ASN][1000 genomes]
rs833375	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs833378	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs833384	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs855563	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93682800-93685600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:93682800-93685600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:93682800-93685600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:93682800-93685600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:93682800-93689400	Active TSS	GM12878-XiMat	blood
6	chr10:93683400-93685600	Active TSS	HSMM	muscle
7	chr10:93683400-93685800	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr10:93684200-93688600	Weak transcription	Pancreas	Pancrea
9	chr10:93684200-93691200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:93684200-93691200	Weak transcription	Gastric	stomach
11	chr10:93684200-93691800	Weak transcription	Lung	lung
12	chr10:93684200-93692600	Weak transcription	Spleen	Spleen
13	chr10:93684200-93694000	Weak transcription	Esophagus	oesophagus
14	chr10:93684400-93685600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr10:93684400-93691200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:93684400-93692600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:93684600-93685600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:93684600-93687000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr10:93684600-93688200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:93684800-93685600	Enhancers	Brain Cingulate Gyrus	brain
22	chr10:93684800-93685600	Enhancers	Left Ventricle	heart
23	chr10:93684800-93685600	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr10:93684800-93685800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:93684800-93685800	Enhancers	Fetal Heart	heart
26	chr10:93684800-93686200	Weak transcription	Brain Substantia Nigra	brain
27	chr10:93684800-93686400	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr10:93684800-93686600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr10:93684800-93686600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:93684800-93686800	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr10:93684800-93687000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:93684800-93689000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr10:93684800-93691200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:93685000-93685600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:93685000-93685600	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr10:93685000-93685600	Enhancers	Fetal Thymus	thymus
37	chr10:93685000-93685600	Enhancers	Psoas Muscle	Psoas
38	chr10:93685000-93685800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:93685000-93685800	Enhancers	Primary B cells from cord blood	blood
40	chr10:93685000-93685800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr10:93685000-93685800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr10:93685000-93685800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:93685000-93685800	Enhancers	HUVEC	blood vessel
44	chr10:93685000-93686000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr10:93685000-93686000	Enhancers	Ovary	ovary
46	chr10:93685000-93686200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr10:93685000-93686200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:93685000-93686200	Weak transcription	Fetal Lung	lung
49	chr10:93685000-93686200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr10:93685000-93686400	Enhancers	Colon Smooth Muscle	Colon

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