Variant report

Variant	rs12779538
Chromosome Location	chr10:93710834-93710835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93683411..93687274-chr10:93710058..93713184,3	MCF-7	breast:
2	chr10:93668076..93669936-chr10:93710828..93712527,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11186755	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186768	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1137825	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11592774	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11598321	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11598436	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12413858	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12415793	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12416560	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12569736	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12571564	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763600	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12766605	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12771773	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12774295	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12774665	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12780724	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1340421	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1437	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1474051	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1581239	0.86[ASN][1000 genomes]
rs1626927	0.86[ASN][1000 genomes]
rs1711842	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1711846	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1711858	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1776210	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2252204	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2676802	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2676808	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2676809	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2676814	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2676817	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2676819	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2676820	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2676822	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2676825	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2792018	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2792022	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2792025	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2797639	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2797647	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2995545	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2995546	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34364047	0.92[ASN][1000 genomes]
rs3814639	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814640	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4375360	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933224	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933705	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933706	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933707	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7904126	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909492	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7917105	0.81[ASN][1000 genomes]
rs833366	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs833367	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs833370	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs833372	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs833373	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs833374	0.88[ASN][1000 genomes]
rs833375	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs833378	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs833384	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs855563	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
3	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
4	chr10:93688800-93711400	Weak transcription	Fetal Brain Male	brain
5	chr10:93689200-93719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
7	chr10:93691800-93716600	Weak transcription	NHLF	lung
8	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:93692000-93711400	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:93696400-93711200	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:93696600-93711200	Weak transcription	Brain Angular Gyrus	brain
12	chr10:93696600-93713200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:93696800-93711200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:93696800-93711200	Weak transcription	K562	blood
15	chr10:93696800-93711400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:93696800-93711600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:93696800-93712000	Weak transcription	Psoas Muscle	Psoas
18	chr10:93696800-93712000	Weak transcription	Right Ventricle	heart
19	chr10:93696800-93712200	Weak transcription	Aorta	Aorta
20	chr10:93696800-93712800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:93696800-93715000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr10:93696800-93716400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:93696800-93735600	Weak transcription	Pancreas	Pancrea
24	chr10:93697000-93717000	Weak transcription	Brain Substantia Nigra	brain
25	chr10:93697000-93718000	Weak transcription	Spleen	Spleen
26	chr10:93697000-93735600	Weak transcription	Esophagus	oesophagus
27	chr10:93697200-93711200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr10:93697200-93711800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:93697200-93712200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:93697200-93718400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:93697400-93711000	Weak transcription	HSMMtube	muscle
32	chr10:93697800-93748800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr10:93698000-93711800	Weak transcription	A549	lung
34	chr10:93699600-93750600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr10:93700800-93717800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:93701800-93714600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr10:93702600-93711200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:93704000-93723400	Weak transcription	Colonic Mucosa	Colon
39	chr10:93704200-93711200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:93704200-93711200	Weak transcription	HUVEC	blood vessel
41	chr10:93704600-93719600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:93704800-93711000	Weak transcription	Adipose Nuclei	Adipose
43	chr10:93704800-93711000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:93704800-93711200	Weak transcription	Fetal Brain Female	brain
45	chr10:93704800-93712200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:93704800-93807400	Weak transcription	Gastric	stomach
47	chr10:93705200-93711000	Weak transcription	NH-A	brain
48	chr10:93705200-93711400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr10:93705400-93711000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr10:93705400-93711000	Weak transcription	Muscle Satellite Cultured Cells	--

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