Variant report

Variant	rs2995546
Chromosome Location	chr10:93785285-93785286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11186755	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186768	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1137825	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11592774	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11598321	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11598436	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12413858	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12415793	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12416560	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12569736	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12571564	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12763600	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12766605	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12771773	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12774295	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12774665	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12777025	0.86[ASN][1000 genomes]
rs12779538	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12780724	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1340421	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1474051	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1581239	0.93[ASN][1000 genomes]
rs1626927	0.93[ASN][1000 genomes]
rs1711842	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711846	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711858	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1776210	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2252204	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676802	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2676808	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2676809	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2676814	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676817	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676819	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676820	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676822	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676825	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2792018	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2792022	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2792025	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2797639	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797647	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2995545	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34364047	0.85[ASN][1000 genomes]
rs3814639	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3814640	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4375360	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933224	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933705	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933706	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4933707	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7904126	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7909492	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7917105	0.88[ASN][1000 genomes]
rs833366	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833367	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833370	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833372	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs833374	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs833375	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs833378	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs833384	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs855563	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93704800-93807400	Weak transcription	Gastric	stomach
2	chr10:93723800-93786600	Weak transcription	Colonic Mucosa	Colon
3	chr10:93743000-93795000	Weak transcription	Stomach Mucosa	stomach
4	chr10:93743600-93786400	Weak transcription	Aorta	Aorta
5	chr10:93745000-93797200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:93749600-93792200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:93761200-93794600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:93765600-93792200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:93765800-93786400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:93767400-93790000	Strong transcription	Fetal Thymus	thymus
11	chr10:93767600-93791000	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:93767600-93794000	Strong transcription	Primary B cells from cord blood	blood
13	chr10:93768000-93792800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:93768000-93793000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr10:93768000-93793200	Strong transcription	Placenta	Placenta
16	chr10:93768200-93796800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:93768400-93786400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:93768600-93790000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr10:93769600-93793600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:93769600-93793600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:93770400-93794000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:93771800-93794800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:93772000-93794400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:93772200-93789800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:93772200-93792200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr10:93772200-93793200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr10:93772200-93794400	Strong transcription	Liver	Liver
28	chr10:93772200-93794600	Strong transcription	Dnd41	blood
29	chr10:93772200-93794800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr10:93772400-93794000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:93772600-93793000	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:93772600-93794800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:93772600-93794800	Strong transcription	Duodenum Mucosa	Duodenum
34	chr10:93772800-93788600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:93772800-93789800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:93772800-93789800	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:93772800-93790000	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:93772800-93793000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:93772800-93793800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:93772800-93794000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr10:93772800-93794400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:93773400-93790200	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr10:93773600-93787800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr10:93774600-93786400	Weak transcription	Right Ventricle	heart
45	chr10:93774600-93786600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:93774600-93805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr10:93774800-93786400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr10:93775000-93788600	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr10:93775800-93790200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:93776000-93790000	Strong transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links