Variant report

Variant	rs12780724
Chromosome Location	chr10:93704183-93704184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93681776..93685679-chr10:93700861..93704266,5	K562	blood:
2	chr10:93691322..93693028-chr10:93702196..93704196,2	K562	blood:
3	chr10:93698323..93701055-chr10:93702611..93704544,2	K562	blood:

Variant related genes	Relation type
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11186755	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186768	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1137825	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592774	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11598321	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11598436	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12413858	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12415793	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12416560	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12569736	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12571564	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12763600	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12766605	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771773	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12774295	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12774665	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12779538	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1340421	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1437	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1474051	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1581239	0.85[ASN][1000 genomes]
rs1626927	0.85[ASN][1000 genomes]
rs1711842	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1711846	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1711858	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1776210	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2252204	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676802	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2676808	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2676809	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2676814	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676817	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676819	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676820	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676822	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676825	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2792018	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2792022	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2792025	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2797639	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2797647	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2995545	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2995546	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34364047	0.93[ASN][1000 genomes]
rs3814639	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814640	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4375360	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933224	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933705	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933706	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933707	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7904126	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7909492	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7917105	0.80[ASN][1000 genomes]
rs833366	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs833367	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs833370	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs833372	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs833373	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs833374	0.87[ASN][1000 genomes]
rs833375	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs833378	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs833384	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs855563	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
4	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
5	chr10:93688800-93711400	Weak transcription	Fetal Brain Male	brain
6	chr10:93689200-93719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:93690000-93709600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
9	chr10:93691000-93709600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:93691800-93707400	Strong transcription	Dnd41	blood
11	chr10:93691800-93716600	Weak transcription	NHLF	lung
12	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:93692000-93711400	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:93694400-93704400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:93695000-93707000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr10:93696400-93711200	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:93696600-93705200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:93696600-93711200	Weak transcription	Brain Angular Gyrus	brain
19	chr10:93696600-93713200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:93696800-93704400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:93696800-93708600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:93696800-93711200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:93696800-93711200	Weak transcription	K562	blood
24	chr10:93696800-93711400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:93696800-93711600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:93696800-93712000	Weak transcription	Psoas Muscle	Psoas
27	chr10:93696800-93712000	Weak transcription	Right Ventricle	heart
28	chr10:93696800-93712200	Weak transcription	Aorta	Aorta
29	chr10:93696800-93712800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:93696800-93715000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr10:93696800-93716400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:93696800-93735600	Weak transcription	Pancreas	Pancrea
33	chr10:93697000-93717000	Weak transcription	Brain Substantia Nigra	brain
34	chr10:93697000-93718000	Weak transcription	Spleen	Spleen
35	chr10:93697000-93735600	Weak transcription	Esophagus	oesophagus
36	chr10:93697200-93711200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr10:93697200-93711800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:93697200-93712200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:93697200-93718400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:93697400-93711000	Weak transcription	HSMMtube	muscle
41	chr10:93697600-93704400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:93697800-93704600	Weak transcription	NH-A	brain
43	chr10:93697800-93748800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr10:93698000-93704400	Weak transcription	HMEC	breast
45	chr10:93698000-93711800	Weak transcription	A549	lung
46	chr10:93699600-93706400	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:93699600-93706600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:93699600-93750600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr10:93699800-93705600	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr10:93700000-93708800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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