Variant report

Variant	rs11188935
Chromosome Location	chr10:98586737-98586738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10430660	0.88[EUR][1000 genomes]
rs10882847	0.81[ASN][1000 genomes]
rs10882852	0.81[ASN][1000 genomes]
rs10882855	0.88[EUR][1000 genomes]
rs11188950	0.80[ASN][1000 genomes]
rs11188952	0.81[ASN][1000 genomes]
rs12257954	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12265203	0.88[EUR][1000 genomes]
rs7088648	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7924085	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv825532	chr10:98567434-98618034	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98584600-98586800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:98584800-98587000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr10:98585800-98588600	Enhancers	K562	blood
4	chr10:98586000-98590200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:98586200-98586800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:98586200-98587400	Enhancers	HepG2	liver
7	chr10:98586400-98586800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:98586600-98588800	Weak transcription	Fetal Intestine Large	intestine
9	chr10:98586600-98588800	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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