Variant report

Variant	rs10882852
Chromosome Location	chr10:98628232-98628233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10219031	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10430660	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10786316	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10882847	0.90[ASN][1000 genomes]
rs10882855	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882856	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11188935	0.81[ASN][1000 genomes]
rs11188950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188952	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188962	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188964	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12257954	0.82[ASN][1000 genomes]
rs12265203	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4132965	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4146592	0.83[AMR][1000 genomes]
rs7088648	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7924085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98594200-98639400	Weak transcription	Thymus	Thymus
2	chr10:98610800-98632200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:98611000-98649800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
5	chr10:98611200-98640200	Weak transcription	Fetal Heart	heart
6	chr10:98616600-98629600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr10:98617200-98651600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr10:98617600-98631600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr10:98619000-98632600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:98619000-98643200	Weak transcription	Right Ventricle	heart
11	chr10:98619000-98644200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:98619000-98645400	Weak transcription	Dnd41	blood
13	chr10:98619800-98631800	Weak transcription	Spleen	Spleen
14	chr10:98620200-98645800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:98620400-98632600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:98620600-98630000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:98621600-98628800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:98622000-98633800	Weak transcription	Brain Germinal Matrix	brain
19	chr10:98622200-98645800	Weak transcription	Fetal Muscle Leg	muscle
20	chr10:98622200-98646000	Weak transcription	Placenta	Placenta
21	chr10:98622400-98630800	Weak transcription	Lung	lung
22	chr10:98622400-98631600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:98622400-98632000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:98622400-98632800	Weak transcription	Primary T cells from cord blood	blood
25	chr10:98622400-98638400	Weak transcription	Fetal Thymus	thymus
26	chr10:98622400-98652200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:98622600-98628600	Weak transcription	Gastric	stomach
28	chr10:98622600-98629000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr10:98622600-98632000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:98622600-98640200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:98622600-98644200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr10:98622600-98648800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:98622800-98638800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:98623800-98633400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:98624000-98632600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:98624000-98640200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:98624000-98645800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:98624200-98631000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:98624200-98640400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:98624400-98631600	Weak transcription	Primary B cells from cord blood	blood
41	chr10:98624400-98631800	Weak transcription	Left Ventricle	heart
42	chr10:98624400-98632000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:98624400-98632600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:98624400-98637600	Weak transcription	Liver	Liver
45	chr10:98624400-98641600	Weak transcription	Fetal Brain Female	brain
46	chr10:98624400-98644200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:98624400-98645800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr10:98624400-98645800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:98624400-98646000	Weak transcription	Adipose Nuclei	Adipose
50	chr10:98624400-98663000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links