Variant report

Variant	rs11188964
Chromosome Location	chr10:98651201-98651202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98590611..98593195-chr10:98649366..98652227,3	MCF-7	breast:
2	chr10:98650808..98652421-chr10:98656087..98657698,2	K562	blood:

Variant related genes	Relation type
ENSG00000196233	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10219031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10430660	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10786316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10882847	0.84[ASN][1000 genomes]
rs10882852	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882855	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10882856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10882861	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs11188950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188952	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12265203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3814163	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs4132965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4146592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7082522	1.00[CEU][hapmap]
rs7088648	0.84[ASN][1000 genomes]
rs7098255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs7924085	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
2	chr10:98617200-98651600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:98622400-98652200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98624400-98663000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:98624800-98652200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:98624800-98656800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:98624800-98696000	Weak transcription	K562	blood
8	chr10:98633000-98656600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:98633600-98670000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:98633800-98652200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:98634600-98651800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:98636800-98683400	Weak transcription	Osteobl	bone
13	chr10:98637400-98708800	Weak transcription	NH-A	brain
14	chr10:98638800-98654200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:98639800-98714600	Weak transcription	Esophagus	oesophagus
16	chr10:98640600-98666800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:98640600-98714600	Weak transcription	Hela-S3	cervix
18	chr10:98640800-98651400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr10:98642800-98663800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:98643600-98655000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:98644200-98652400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:98644600-98652400	Weak transcription	Psoas Muscle	Psoas
23	chr10:98644600-98658600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:98644600-98658800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr10:98644800-98652000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:98644800-98652200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:98644800-98663800	Weak transcription	Ovary	ovary
28	chr10:98644800-98664000	Weak transcription	NHLF	lung
29	chr10:98644800-98669800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:98644800-98674600	Weak transcription	Spleen	Spleen
31	chr10:98644800-98681400	Weak transcription	Right Ventricle	heart
32	chr10:98645000-98656400	Weak transcription	NHDF-Ad	bronchial
33	chr10:98645200-98658000	Weak transcription	Brain Angular Gyrus	brain
34	chr10:98645400-98658000	Weak transcription	Brain Substantia Nigra	brain
35	chr10:98645400-98662600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:98645400-98678000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:98646200-98652000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:98646400-98651600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr10:98646800-98651400	Weak transcription	Fetal Thymus	thymus
40	chr10:98646800-98651800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr10:98646800-98651800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:98646800-98654600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr10:98647000-98651600	Weak transcription	Dnd41	blood
44	chr10:98649200-98652600	ZNF genes & repeats	GM12878-XiMat	blood
45	chr10:98649200-98653000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:98649400-98651600	Strong transcription	Primary B cells from cord blood	blood
47	chr10:98649400-98651600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:98649400-98655000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr10:98649400-98655600	Weak transcription	Lung	lung
50	chr10:98649400-98656200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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