Variant report

Variant	rs10430660
Chromosome Location	chr10:98674939-98674940
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10219031	0.95[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10786316	0.95[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882847	0.81[ASN][1000 genomes]
rs10882852	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882855	0.85[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882856	0.84[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188935	0.88[EUR][1000 genomes]
rs11188950	0.84[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188952	1.00[ASW][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188962	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188964	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12257954	0.88[EUR][1000 genomes]
rs12265203	0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814163	1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4132965	0.95[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4146592	0.84[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7088648	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7098255	0.84[MKK][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7924085	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv948154	chr10:98674341-98676825	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
2	chr10:98624800-98696000	Weak transcription	K562	blood
3	chr10:98636800-98683400	Weak transcription	Osteobl	bone
4	chr10:98637400-98708800	Weak transcription	NH-A	brain
5	chr10:98639800-98714600	Weak transcription	Esophagus	oesophagus
6	chr10:98640600-98714600	Weak transcription	Hela-S3	cervix
7	chr10:98644800-98681400	Weak transcription	Right Ventricle	heart
8	chr10:98645400-98678000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:98650200-98708800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:98653400-98675200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:98653400-98714200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:98654200-98675400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:98656000-98675400	Weak transcription	Pancreas	Pancrea
14	chr10:98657400-98705800	Weak transcription	NHDF-Ad	bronchial
15	chr10:98659000-98714600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:98661600-98675400	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:98661800-98678000	Weak transcription	Right Atrium	heart
18	chr10:98661800-98680600	Weak transcription	Left Ventricle	heart
19	chr10:98662800-98687600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:98663000-98688000	Weak transcription	Adipose Nuclei	Adipose
21	chr10:98663000-98695000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr10:98663000-98720400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:98663400-98691200	Weak transcription	Small Intestine	intestine
24	chr10:98663600-98678000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:98663600-98689400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr10:98663600-98714800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:98664400-98678000	Weak transcription	Gastric	stomach
28	chr10:98664400-98678200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:98664400-98696400	Weak transcription	NHLF	lung
30	chr10:98664800-98714000	Weak transcription	Colonic Mucosa	Colon
31	chr10:98665000-98714800	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:98666000-98686000	Weak transcription	NHEK	skin
33	chr10:98666000-98714600	Weak transcription	Fetal Brain Female	brain
34	chr10:98666200-98680600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr10:98666800-98687800	Weak transcription	HUVEC	blood vessel
36	chr10:98667000-98677400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:98667000-98682200	Weak transcription	HSMMtube	muscle
38	chr10:98667000-98685800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:98667000-98688200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:98667200-98683800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:98667200-98708800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr10:98667600-98675800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:98668800-98698800	Weak transcription	Fetal Kidney	kidney
44	chr10:98669200-98689600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:98669400-98677200	Weak transcription	Brain Anterior Caudate	brain
46	chr10:98669400-98698600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:98669400-98714400	Weak transcription	HMEC	breast
48	chr10:98669600-98678400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr10:98669600-98685600	Weak transcription	Brain Angular Gyrus	brain
50	chr10:98670400-98678000	Weak transcription	Brain Substantia Nigra	brain

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