Variant report

Variant	rs12265203
Chromosome Location	chr10:98657516-98657517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98650808..98652421-chr10:98656087..98657698,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10219031	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10430660	0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786316	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882847	0.81[ASN][1000 genomes]
rs10882852	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882855	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882861	0.89[CHB][hapmap];0.97[CHD][hapmap];0.94[MEX][hapmap]
rs11188935	0.88[EUR][1000 genomes]
rs11188950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12257954	0.88[EUR][1000 genomes]
rs3814163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4132965	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4146592	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7082522	1.00[CEU][hapmap]
rs7088648	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7098255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7924085	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
2	chr10:98624400-98663000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:98624800-98696000	Weak transcription	K562	blood
4	chr10:98633600-98670000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:98636800-98683400	Weak transcription	Osteobl	bone
6	chr10:98637400-98708800	Weak transcription	NH-A	brain
7	chr10:98639800-98714600	Weak transcription	Esophagus	oesophagus
8	chr10:98640600-98666800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:98640600-98714600	Weak transcription	Hela-S3	cervix
10	chr10:98642800-98663800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:98644600-98658600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:98644600-98658800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:98644800-98663800	Weak transcription	Ovary	ovary
14	chr10:98644800-98664000	Weak transcription	NHLF	lung
15	chr10:98644800-98669800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:98644800-98674600	Weak transcription	Spleen	Spleen
17	chr10:98644800-98681400	Weak transcription	Right Ventricle	heart
18	chr10:98645200-98658000	Weak transcription	Brain Angular Gyrus	brain
19	chr10:98645400-98658000	Weak transcription	Brain Substantia Nigra	brain
20	chr10:98645400-98662600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:98645400-98678000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:98649400-98672200	Weak transcription	HSMM	muscle
23	chr10:98650000-98657800	Weak transcription	Fetal Heart	heart
24	chr10:98650000-98661400	Weak transcription	Right Atrium	heart
25	chr10:98650200-98661400	Weak transcription	Fetal Kidney	kidney
26	chr10:98650200-98662000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr10:98650200-98662600	Weak transcription	Gastric	stomach
28	chr10:98650200-98673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:98650200-98674600	Weak transcription	Thymus	Thymus
30	chr10:98650200-98708800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr10:98650600-98667400	Weak transcription	HMEC	breast
32	chr10:98651200-98657600	Enhancers	HepG2	liver
33	chr10:98651800-98667800	Weak transcription	Fetal Stomach	stomach
34	chr10:98652000-98673600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:98652200-98661000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:98652400-98672200	Weak transcription	Fetal Thymus	thymus
37	chr10:98652600-98660600	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:98652600-98661400	Weak transcription	Fetal Lung	lung
39	chr10:98652600-98662600	Weak transcription	Brain Anterior Caudate	brain
40	chr10:98652600-98664000	Weak transcription	Fetal Brain Female	brain
41	chr10:98652600-98667600	Weak transcription	Dnd41	blood
42	chr10:98652600-98669000	Weak transcription	Primary B cells from cord blood	blood
43	chr10:98652600-98671200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:98652600-98673600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:98652600-98674800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:98652800-98662400	Weak transcription	Fetal Intestine Large	intestine
47	chr10:98652800-98662600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:98652800-98667600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:98652800-98667600	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr10:98653000-98666800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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