Variant report

Variant	rs10882861
Chromosome Location	chr10:98751443-98751444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:98751079-98751666	GM12892	blood:	n/a	n/a
2	RUNX3	chr10:98751204-98751538	GM12878	blood:	n/a	n/a
3	POLR2A	chr10:98751275-98751665	HepG2	liver:	n/a	n/a
4	IKZF1	chr10:98750990-98751504	GM12878	blood:	n/a	n/a
5	RUNX3	chr10:98751065-98751596	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98749781..98752150-chr10:98752568..98754778,2	K562	blood:

Variant related genes	Relation type
ENSG00000231025	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10219031	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[ASN][1000 genomes]
rs10786316	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[ASN][1000 genomes]
rs10882855	0.90[CHB][hapmap];0.94[CHD][hapmap];0.81[LWK][hapmap]
rs10882856	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.94[MEX][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs11188950	0.89[CHB][hapmap];0.97[CHD][hapmap];0.90[LWK][hapmap];0.94[MEX][hapmap];1.00[YRI][hapmap]
rs11188952	0.89[CHB][hapmap];0.97[CHD][hapmap];0.94[MEX][hapmap]
rs11188962	0.89[CHB][hapmap]
rs11188964	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs12265203	0.89[CHB][hapmap];0.97[CHD][hapmap];0.94[MEX][hapmap]
rs3814163	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.94[ASN][1000 genomes]
rs4132965	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[ASN][1000 genomes]
rs4146592	0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs7098255	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831951	chr10:98717103-98761280	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98741200-98758000	Weak transcription	K562	blood
2	chr10:98742000-98757000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr10:98742200-98752200	Weak transcription	Colonic Mucosa	Colon
4	chr10:98742200-98754600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:98742200-98754600	Weak transcription	Right Ventricle	heart
6	chr10:98742200-98754800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:98742200-98755000	Weak transcription	Left Ventricle	heart
8	chr10:98742400-98752400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:98742600-98752600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:98742600-98752800	Weak transcription	Gastric	stomach
11	chr10:98742600-98755800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:98742600-98756000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:98742600-98756800	Weak transcription	Lung	lung
14	chr10:98743000-98758600	Weak transcription	Spleen	Spleen
15	chr10:98743800-98758000	Weak transcription	Fetal Brain Female	brain
16	chr10:98744400-98752200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:98745000-98758400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:98745200-98756000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:98745200-98760400	Weak transcription	Primary T cells from cord blood	blood
20	chr10:98745400-98752200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:98745400-98755600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:98745400-98756600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:98745400-98757600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:98746400-98752200	Weak transcription	Thymus	Thymus
25	chr10:98746400-98752600	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:98746400-98755000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:98746400-98755600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:98746400-98758600	Weak transcription	Esophagus	oesophagus
29	chr10:98746600-98752000	Weak transcription	Fetal Thymus	thymus
30	chr10:98746600-98752200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr10:98746600-98755000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:98747200-98752200	Weak transcription	Pancreas	Pancrea
33	chr10:98747600-98751800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:98747800-98752200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:98748200-98758200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:98748800-98754000	Weak transcription	Psoas Muscle	Psoas
37	chr10:98748800-98754600	Weak transcription	Ovary	ovary
38	chr10:98748800-98755800	Weak transcription	Aorta	Aorta
39	chr10:98748800-98757600	Weak transcription	Brain Germinal Matrix	brain
40	chr10:98749000-98752000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:98749000-98753800	Weak transcription	Primary B cells from cord blood	blood
42	chr10:98749200-98752600	Weak transcription	Fetal Kidney	kidney
43	chr10:98749800-98751600	Enhancers	Rectal Smooth Muscle	rectum
44	chr10:98750200-98751600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:98750200-98752800	Enhancers	NHDF-Ad	bronchial
46	chr10:98750400-98751600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:98750400-98752000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:98750400-98752600	Enhancers	Fetal Intestine Large	intestine
49	chr10:98750600-98751600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:98750600-98751600	Enhancers	NHEK	skin

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