Variant report

Variant	rs10786316
Chromosome Location	chr10:98684650-98684651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10219031	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10430660	0.95[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882852	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10882855	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882861	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[ASN][1000 genomes]
rs11188950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs11188952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11188962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11188964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12265203	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3814163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4132965	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4146592	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7082522	1.00[CEU][hapmap]
rs7098255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7924085	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
2	chr10:98624800-98696000	Weak transcription	K562	blood
3	chr10:98637400-98708800	Weak transcription	NH-A	brain
4	chr10:98639800-98714600	Weak transcription	Esophagus	oesophagus
5	chr10:98640600-98714600	Weak transcription	Hela-S3	cervix
6	chr10:98650200-98708800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:98653400-98714200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:98657400-98705800	Weak transcription	NHDF-Ad	bronchial
9	chr10:98659000-98714600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:98662800-98687600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:98663000-98688000	Weak transcription	Adipose Nuclei	Adipose
12	chr10:98663000-98695000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr10:98663000-98720400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:98663400-98691200	Weak transcription	Small Intestine	intestine
15	chr10:98663600-98689400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:98663600-98714800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:98664400-98696400	Weak transcription	NHLF	lung
18	chr10:98664800-98714000	Weak transcription	Colonic Mucosa	Colon
19	chr10:98665000-98714800	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:98666000-98686000	Weak transcription	NHEK	skin
21	chr10:98666000-98714600	Weak transcription	Fetal Brain Female	brain
22	chr10:98666800-98687800	Weak transcription	HUVEC	blood vessel
23	chr10:98667000-98685800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:98667000-98688200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:98667200-98708800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:98668800-98698800	Weak transcription	Fetal Kidney	kidney
27	chr10:98669200-98689600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:98669400-98698600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:98669400-98714400	Weak transcription	HMEC	breast
30	chr10:98669600-98685600	Weak transcription	Brain Angular Gyrus	brain
31	chr10:98670400-98707800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:98671000-98684800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr10:98671200-98714600	Weak transcription	Ovary	ovary
34	chr10:98671200-98719800	Weak transcription	Fetal Brain Male	brain
35	chr10:98671400-98708200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:98671600-98685800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:98672200-98685800	Weak transcription	A549	lung
38	chr10:98672400-98714600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:98674800-98696800	Weak transcription	Brain Germinal Matrix	brain
40	chr10:98675200-98708600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr10:98675600-98687600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:98675600-98687800	Weak transcription	Liver	Liver
43	chr10:98675600-98714600	Weak transcription	Fetal Thymus	thymus
44	chr10:98675800-98687600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:98675800-98687800	Weak transcription	Fetal Lung	lung
46	chr10:98675800-98688600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:98675800-98688800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:98675800-98688800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:98675800-98689800	Weak transcription	Pancreas	Pancrea
50	chr10:98675800-98694800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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