Variant report

Variant	rs7098255
Chromosome Location	chr10:98742021-98742022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98741127..98743717-chr10:98745929..98748788,2	MCF-7	breast:
2	chr10:98741871..98742756-chr10:98784734..98786018,5	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10219031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10430660	0.84[MKK][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10786316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882855	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.90[LWK][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882856	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882861	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11188950	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11188952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs11188962	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs11188964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs11189016	1.00[CEU][hapmap]
rs12265203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17112464	1.00[CEU][hapmap]
rs3814163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4146592	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7082522	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831951	chr10:98717103-98761280	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98716600-98743200	Weak transcription	Hela-S3	cervix
2	chr10:98731800-98745600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:98732800-98744200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:98734000-98748400	Weak transcription	Stomach Mucosa	stomach
5	chr10:98734400-98744600	Weak transcription	NHDF-Ad	bronchial
6	chr10:98734600-98746800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr10:98738000-98743000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:98738400-98744200	Weak transcription	Brain Angular Gyrus	brain
9	chr10:98738800-98744600	Strong transcription	Fetal Intestine Small	intestine
10	chr10:98739000-98742400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:98739200-98744200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:98739800-98742600	Strong transcription	Primary T cells from cord blood	blood
13	chr10:98740200-98742600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:98740200-98743600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:98740200-98743600	Strong transcription	Fetal Intestine Large	intestine
16	chr10:98740400-98742200	Strong transcription	Primary hematopoietic stem cells	blood
17	chr10:98740400-98742400	Strong transcription	Osteobl	bone
18	chr10:98740400-98742600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:98740400-98742800	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr10:98740400-98743000	Strong transcription	Primary B cells from cord blood	blood
21	chr10:98740400-98743000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:98740400-98743200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:98740600-98742200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:98740600-98742200	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:98740600-98742200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:98740600-98742200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:98740600-98742200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:98740600-98742200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:98740600-98742200	Strong transcription	Brain Cingulate Gyrus	brain
30	chr10:98740600-98742200	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr10:98740600-98742200	Strong transcription	Left Ventricle	heart
32	chr10:98740600-98742200	Strong transcription	Pancreas	Pancrea
33	chr10:98740600-98742200	Strong transcription	Rectal Smooth Muscle	rectum
34	chr10:98740600-98742200	Strong transcription	Right Ventricle	heart
35	chr10:98740600-98742200	Strong transcription	Stomach Smooth Muscle	stomach
36	chr10:98740600-98742200	Strong transcription	GM12878-XiMat	blood
37	chr10:98740600-98742200	Strong transcription	HMEC	breast
38	chr10:98740600-98742400	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:98740600-98742400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:98740600-98742400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:98740600-98742400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr10:98740600-98742400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr10:98740600-98742400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:98740600-98742400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:98740600-98742400	Strong transcription	Adipose Nuclei	Adipose
46	chr10:98740600-98742400	Strong transcription	Brain Anterior Caudate	brain
47	chr10:98740600-98742400	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:98740600-98742400	Strong transcription	Esophagus	oesophagus
49	chr10:98740600-98742400	Strong transcription	Fetal Kidney	kidney
50	chr10:98740600-98742400	Strong transcription	Sigmoid Colon	Sigmoid Colon

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