Variant report

Variant	rs4146592
Chromosome Location	chr10:98721602-98721603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98711866..98714396-chr10:98719836..98721704,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10219031	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10430660	0.84[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10786316	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882852	0.83[AMR][1000 genomes]
rs10882855	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882856	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882861	0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs11188950	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs11188952	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11188962	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11188964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11189016	1.00[CEU][hapmap]
rs12265203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17112464	1.00[CEU][hapmap]
rs3814163	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4132965	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7082522	1.00[CEU][hapmap]
rs7098255	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7924085	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831951	chr10:98717103-98761280	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98679800-98724800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:98709200-98722400	Weak transcription	Fetal Heart	heart
3	chr10:98709200-98736200	Weak transcription	Psoas Muscle	Psoas
4	chr10:98709600-98722800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:98712800-98731200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:98715200-98721800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:98715200-98723000	Weak transcription	Brain Substantia Nigra	brain
8	chr10:98715400-98722200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:98715400-98726400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:98715400-98733800	Weak transcription	A549	lung
11	chr10:98715400-98740600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:98715400-98740600	Weak transcription	Aorta	Aorta
13	chr10:98715400-98740600	Weak transcription	Esophagus	oesophagus
14	chr10:98715600-98722200	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:98715600-98722600	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:98715600-98731000	Weak transcription	Small Intestine	intestine
17	chr10:98715600-98735600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:98715600-98740600	Weak transcription	Fetal Stomach	stomach
19	chr10:98715600-98740600	Weak transcription	NHEK	skin
20	chr10:98715800-98721800	Weak transcription	Colonic Mucosa	Colon
21	chr10:98715800-98723000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:98715800-98740600	Weak transcription	Lung	lung
23	chr10:98716000-98722400	Weak transcription	HSMMtube	muscle
24	chr10:98716000-98722600	Weak transcription	Brain Angular Gyrus	brain
25	chr10:98716000-98723000	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:98716000-98723400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:98716000-98724800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:98716000-98732200	Weak transcription	GM12878-XiMat	blood
29	chr10:98716000-98733600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:98716000-98737600	Weak transcription	Thymus	Thymus
31	chr10:98716000-98740200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:98716000-98740400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:98716000-98740600	Weak transcription	Brain Anterior Caudate	brain
34	chr10:98716000-98740600	Weak transcription	Gastric	stomach
35	chr10:98716000-98740600	Weak transcription	Left Ventricle	heart
36	chr10:98716000-98740600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr10:98716000-98741000	Weak transcription	Brain Germinal Matrix	brain
38	chr10:98716200-98740800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:98716400-98725400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:98716400-98726000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr10:98716400-98740600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:98716600-98722800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:98716600-98723000	Weak transcription	Adipose Nuclei	Adipose
44	chr10:98716600-98725000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:98716600-98725200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:98716600-98739800	Weak transcription	Primary T cells from cord blood	blood
47	chr10:98716600-98740600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr10:98716600-98740600	Weak transcription	Ovary	ovary
49	chr10:98716600-98740600	Weak transcription	HMEC	breast
50	chr10:98716600-98743200	Weak transcription	Hela-S3	cervix

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