Variant report

Variant	rs10882847
Chromosome Location	chr10:98597027-98597028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98592318..98594800-chr10:98594886..98599322,5	MCF-7	breast:
2	chr10:98595510..98597192-chr10:98598664..98600998,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196233	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10430660	0.81[ASN][1000 genomes]
rs10882852	0.90[ASN][1000 genomes]
rs10882855	0.82[ASN][1000 genomes]
rs11188935	0.81[ASN][1000 genomes]
rs11188950	0.91[ASN][1000 genomes]
rs11188952	0.90[ASN][1000 genomes]
rs11188962	0.85[ASN][1000 genomes]
rs11188964	0.84[ASN][1000 genomes]
rs12257954	0.81[ASN][1000 genomes]
rs12265203	0.81[ASN][1000 genomes]
rs7088648	0.91[ASN][1000 genomes]
rs7924085	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv825532	chr10:98567434-98618034	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98593800-98599600	Weak transcription	Lung	lung
2	chr10:98593800-98600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:98593800-98600600	Weak transcription	Esophagus	oesophagus
4	chr10:98593800-98601800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:98593800-98602800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:98593800-98606800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:98593800-98624200	Weak transcription	Colonic Mucosa	Colon
8	chr10:98594000-98597800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:98594000-98604200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:98594200-98599200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:98594200-98600600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:98594200-98610200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:98594200-98610800	Weak transcription	Fetal Thymus	thymus
14	chr10:98594200-98639400	Weak transcription	Thymus	Thymus
15	chr10:98594400-98599600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:98594400-98618800	Weak transcription	Fetal Stomach	stomach
17	chr10:98594800-98599400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:98594800-98600400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:98595000-98597600	Enhancers	Fetal Heart	heart
20	chr10:98595200-98597400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:98595400-98597800	Enhancers	Left Ventricle	heart
22	chr10:98595400-98599200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:98595600-98598600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:98595800-98600600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:98595800-98604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:98595800-98610400	Weak transcription	Aorta	Aorta
27	chr10:98596000-98597400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr10:98596000-98598000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:98596000-98598600	Enhancers	Fetal Brain Female	brain
30	chr10:98596000-98599200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:98596000-98599800	Weak transcription	HMEC	breast
32	chr10:98596000-98600600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:98596000-98602600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:98596000-98610400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr10:98596200-98597200	Weak transcription	Fetal Brain Male	brain
36	chr10:98596200-98597600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:98596200-98599000	Weak transcription	NHEK	skin
38	chr10:98596200-98599600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:98596200-98599800	Weak transcription	NHDF-Ad	bronchial
40	chr10:98596200-98600400	Weak transcription	NH-A	brain
41	chr10:98596200-98600600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:98596200-98602600	Weak transcription	Stomach Mucosa	stomach
43	chr10:98596200-98602800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr10:98596200-98610400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:98596200-98616200	Weak transcription	Brain Germinal Matrix	brain
46	chr10:98596400-98597400	Weak transcription	Primary B cells from cord blood	blood
47	chr10:98596400-98597400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:98596400-98598200	Weak transcription	Brain Angular Gyrus	brain
49	chr10:98596400-98600000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr10:98596400-98600200	Weak transcription	Colon Smooth Muscle	Colon

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