Variant report

Variant	rs11197849
Chromosome Location	chr10:118685774-118685775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118682934..118686649-chr10:118687334..118691249,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12251703	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253831	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254776	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265399	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3981230	1.00[AFR][1000 genomes]
rs6585421	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7900137	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904582	1.00[AMR][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
3	chr10:118651800-118689800	Weak transcription	HSMM	muscle
4	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:118654400-118692200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:118655000-118692400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:118659200-118697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:118659200-118697800	Weak transcription	Fetal Stomach	stomach
12	chr10:118660400-118688200	Weak transcription	Fetal Kidney	kidney
13	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:118664600-118690600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr10:118664600-118693200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:118666600-118686400	Weak transcription	HUVEC	blood vessel
17	chr10:118667200-118698800	Weak transcription	Placenta	Placenta
18	chr10:118667400-118703200	Weak transcription	Aorta	Aorta
19	chr10:118671000-118702800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:118672000-118687200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:118672000-118698000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:118673000-118698600	Weak transcription	Gastric	stomach
23	chr10:118673000-118706400	Weak transcription	NH-A	brain
24	chr10:118673600-118691400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:118673800-118706400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:118674000-118687000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:118674200-118691600	Weak transcription	Lung	lung
28	chr10:118674200-118697800	Weak transcription	Fetal Intestine Small	intestine
29	chr10:118674400-118694400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:118675000-118706600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:118677800-118686000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:118678000-118706600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr10:118679800-118698600	Weak transcription	Adipose Nuclei	Adipose
34	chr10:118680000-118691600	Weak transcription	Pancreas	Pancrea
35	chr10:118680000-118698000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:118680000-118699000	Weak transcription	K562	blood
37	chr10:118680000-118706800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr10:118680400-118698400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:118680400-118698800	Weak transcription	NHEK	skin
40	chr10:118680800-118686200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:118680800-118687400	Weak transcription	HepG2	liver
42	chr10:118680800-118698200	Weak transcription	Ovary	ovary
43	chr10:118680800-118703200	Weak transcription	HMEC	breast
44	chr10:118681000-118685800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:118681000-118686000	Weak transcription	Brain Angular Gyrus	brain
46	chr10:118681000-118686600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr10:118681000-118686800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:118681000-118687000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:118681000-118687200	Weak transcription	Brain Substantia Nigra	brain
50	chr10:118681000-118687200	Weak transcription	A549	lung

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