Variant report

Variant	rs3981230
Chromosome Location	chr10:118708704-118708705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118705537..118708825-chr10:118833697..118836259,3	MCF-7	breast:
2	chr10:118706892..118708756-chr10:118762371..118764787,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11197849	1.00[AFR][1000 genomes]
rs12251703	0.95[AFR][1000 genomes]
rs12253831	0.90[AFR][1000 genomes]
rs12254776	0.85[AFR][1000 genomes]
rs12256769	1.00[MEX][hapmap];1.00[YRI][hapmap]
rs12265399	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs17095423	1.00[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs17095425	0.99[ASN][1000 genomes]
rs6585421	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7900137	0.90[AFR][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:118699200-118709800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:118699200-118710400	Weak transcription	Pancreas	Pancrea
4	chr10:118699200-118712400	Weak transcription	Esophagus	oesophagus
5	chr10:118699200-118724200	Weak transcription	Fetal Intestine Small	intestine
6	chr10:118699200-118740600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:118699200-118748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:118700000-118710400	Weak transcription	Adipose Nuclei	Adipose
9	chr10:118700000-118736800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:118700200-118712400	Weak transcription	Placenta	Placenta
11	chr10:118701000-118733400	Weak transcription	Fetal Kidney	kidney
12	chr10:118702400-118727200	Weak transcription	Stomach Mucosa	stomach
13	chr10:118703200-118721000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:118703400-118720600	Weak transcription	Fetal Brain Male	brain
15	chr10:118703400-118737000	Weak transcription	Aorta	Aorta
16	chr10:118703600-118710000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:118703600-118740000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:118703600-118752200	Weak transcription	Gastric	stomach
19	chr10:118703800-118710400	Weak transcription	Fetal Brain Female	brain
20	chr10:118703800-118720800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:118704000-118710400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:118704200-118716600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr10:118704200-118721000	Weak transcription	Ovary	ovary
24	chr10:118704200-118726600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:118704400-118709600	Weak transcription	Brain Germinal Matrix	brain
26	chr10:118704400-118709800	Weak transcription	Fetal Stomach	stomach
27	chr10:118704800-118709600	Weak transcription	Liver	Liver
28	chr10:118704800-118710200	Weak transcription	Fetal Intestine Large	intestine
29	chr10:118706200-118710200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr10:118706400-118708800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr10:118706600-118708800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:118707400-118710400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:118707600-118710000	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:118707600-118714000	Weak transcription	Brain Anterior Caudate	brain
35	chr10:118707600-118714000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr10:118707800-118709600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:118707800-118709600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:118707800-118721000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr10:118708000-118709600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:118708000-118710200	Weak transcription	HepG2	liver
41	chr10:118708000-118710400	Weak transcription	NHEK	skin
42	chr10:118708000-118711800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:118708000-118714000	Weak transcription	Brain Angular Gyrus	brain
44	chr10:118708000-118715200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:118708000-118719200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:118708000-118719200	Weak transcription	NH-A	brain
47	chr10:118708000-118719600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:118708000-118725800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:118708000-118726600	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:118708000-118735600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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