Variant report

Variant	rs7900137
Chromosome Location	chr10:118726838-118726839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs11197849	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251703	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253831	1.00[AMR][1000 genomes]
rs12254776	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256769	1.00[YRI][hapmap]
rs12265399	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3981230	0.90[AFR][1000 genomes]
rs6585421	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904582	1.00[AMR][1000 genomes]

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:118699200-118740600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:118699200-118748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:118700000-118736800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:118701000-118733400	Weak transcription	Fetal Kidney	kidney
6	chr10:118702400-118727200	Weak transcription	Stomach Mucosa	stomach
7	chr10:118703400-118737000	Weak transcription	Aorta	Aorta
8	chr10:118703600-118740000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:118703600-118752200	Weak transcription	Gastric	stomach
10	chr10:118708000-118735600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:118708200-118730800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:118708200-118733200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:118708200-118734000	Weak transcription	HSMM	muscle
14	chr10:118708200-118744000	Weak transcription	K562	blood
15	chr10:118708600-118736200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:118710800-118731000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:118711000-118727000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:118711000-118735600	Weak transcription	Pancreas	Pancrea
19	chr10:118711000-118739600	Weak transcription	Fetal Stomach	stomach
20	chr10:118711200-118732600	Weak transcription	HUVEC	blood vessel
21	chr10:118711200-118740000	Weak transcription	Adipose Nuclei	Adipose
22	chr10:118711800-118732200	Weak transcription	Hela-S3	cervix
23	chr10:118713000-118732800	Weak transcription	HMEC	breast
24	chr10:118713800-118732800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:118714400-118727800	Weak transcription	NHEK	skin
26	chr10:118721400-118728800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr10:118721400-118730800	Weak transcription	Brain Anterior Caudate	brain
28	chr10:118721400-118731800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:118721600-118764000	Weak transcription	Ovary	ovary
30	chr10:118722200-118727000	Weak transcription	Fetal Brain Female	brain
31	chr10:118722200-118727200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:118722400-118731600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:118723200-118728000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:118723200-118740000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:118723400-118728600	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr10:118724000-118730600	Weak transcription	Fetal Brain Male	brain
37	chr10:118724000-118737800	Weak transcription	Lung	lung
38	chr10:118724200-118730400	Weak transcription	Brain Germinal Matrix	brain
39	chr10:118724400-118727600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr10:118724600-118727600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:118724600-118727600	Strong transcription	HepG2	liver
42	chr10:118724600-118728400	Strong transcription	Liver	Liver
43	chr10:118724800-118727200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:118725200-118736800	Weak transcription	Fetal Intestine Large	intestine
45	chr10:118725200-118763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:118725600-118740600	Weak transcription	Fetal Intestine Small	intestine
47	chr10:118725800-118727000	Enhancers	Brain Substantia Nigra	brain
48	chr10:118726000-118727000	Weak transcription	A549	lung
49	chr10:118726000-118728200	Genic enhancers	Brain Hippocampus Middle	brain
50	chr10:118726000-118733000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links