Variant report
| Variant | rs12265399 |
|---|---|
| Chromosome Location | chr10:118771286-118771287 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000187164 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs11197849 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12251703 | 1.00[AMR][1000 genomes] |
| rs12253831 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12254776 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12256769 | 1.00[MEX][hapmap];0.89[YRI][hapmap] |
| rs3981230 | 0.82[AFR][1000 genomes] |
| rs6585421 | 1.00[AMR][1000 genomes] |
| rs7900137 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7904582 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2755506 | chr10:118748764-118800107 | Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
