Variant report

Variant	rs11202635
Chromosome Location	chr10:89796186-89796187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89620225..89623411-chr10:89793964..89797679,4	MCF-7	breast:
2	chr10:89630068..89631816-chr10:89794611..89796207,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10159827	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12240758	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12264326	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413500	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12414916	1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1414892	0.94[EUR][1000 genomes]
rs2078166	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4933464	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4934374	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs534182	0.83[GIH][hapmap]
rs559783	0.83[GIH][hapmap]
rs677422	0.83[GIH][hapmap]
rs72816127	0.97[EUR][1000 genomes]
rs7907255	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11202635	LIPN	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89788800-89796800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr10:89788800-89797200	Weak transcription	Fetal Thymus	thymus
3	chr10:89788800-89801400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:89789200-89797600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:89791000-89796400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:89792800-89797400	Weak transcription	Fetal Stomach	stomach
7	chr10:89792800-89797600	Weak transcription	NH-A	brain
8	chr10:89793000-89797400	Weak transcription	NHLF	lung
9	chr10:89793000-89799000	Weak transcription	A549	lung
10	chr10:89793200-89797600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:89793200-89799200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:89793400-89798200	Weak transcription	Osteobl	bone
13	chr10:89793800-89797400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:89793800-89797600	Weak transcription	NHDF-Ad	bronchial
15	chr10:89794000-89801200	Weak transcription	Fetal Intestine Small	intestine
16	chr10:89794200-89799400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:89795200-89798000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:89795200-89798600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr10:89795400-89798000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:89796000-89796200	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links