Variant report

Variant	rs12264326
Chromosome Location	chr10:89799026-89799027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89620982..89624449-chr10:89796720..89799905,3	MCF-7	breast:
2	chr10:89798093..89799597-chr10:89878429..89879964,2	MCF-7	breast:
3	chr10:89620950..89624389-chr10:89798936..89802585,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10159827	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11202635	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12240758	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12413500	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12414916	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1414892	0.94[EUR][1000 genomes]
rs2078166	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4933464	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4934374	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72816127	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7907255	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89788800-89801400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:89793200-89799200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:89794000-89801200	Weak transcription	Fetal Intestine Small	intestine
4	chr10:89794200-89799400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:89797200-89799800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:89797400-89799800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:89797400-89801800	Enhancers	NHLF	lung
8	chr10:89797600-89800400	Enhancers	NH-A	brain
9	chr10:89797600-89801200	Weak transcription	Fetal Lung	lung
10	chr10:89797600-89801600	Enhancers	NHDF-Ad	bronchial
11	chr10:89798000-89801400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:89798000-89801400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:89798200-89799800	Enhancers	Osteobl	bone
14	chr10:89798200-89802200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:89798400-89799400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:89798400-89801600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:89798400-89804800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr10:89798400-89805400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr10:89798600-89799400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:89798600-89799400	Weak transcription	Aorta	Aorta
21	chr10:89798600-89801600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr10:89798600-89801800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:89798600-89802000	Weak transcription	Thymus	Thymus
24	chr10:89798600-89802200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:89798800-89799200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:89798800-89799200	Weak transcription	Fetal Thymus	thymus
27	chr10:89798800-89801600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr10:89798800-89801600	Weak transcription	Dnd41	blood
29	chr10:89799000-89800200	Enhancers	A549	lung

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