Variant report

Variant	rs7907255
Chromosome Location	chr10:89800969-89800970
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89786589..89788651-chr10:89799450..89801635,2	MCF-7	breast:
2	chr10:89800688..89804155-chr10:89807111..89810895,5	MCF-7	breast:
3	chr10:89620950..89624389-chr10:89798936..89802585,4	MCF-7	breast:
4	chr10:89800523..89803853-chr10:89848283..89850995,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction
ENSG00000227905	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10159827	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11202635	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12240758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12264326	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12413500	0.97[EUR][1000 genomes]
rs12414916	1.00[CEU][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1414892	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2078166	0.98[EUR][1000 genomes]
rs4933464	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4934374	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs534182	0.80[GIH][hapmap]
rs559783	0.80[GIH][hapmap]
rs677422	0.80[GIH][hapmap]
rs72816127	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7907255	LIPN	cis	cerebellum	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89788800-89801400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:89794000-89801200	Weak transcription	Fetal Intestine Small	intestine
3	chr10:89797400-89801800	Enhancers	NHLF	lung
4	chr10:89797600-89801200	Weak transcription	Fetal Lung	lung
5	chr10:89797600-89801600	Enhancers	NHDF-Ad	bronchial
6	chr10:89798000-89801400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:89798000-89801400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:89798200-89802200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:89798400-89801600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:89798400-89804800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr10:89798400-89805400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr10:89798600-89801600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr10:89798600-89801800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:89798600-89802000	Weak transcription	Thymus	Thymus
15	chr10:89798600-89802200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:89798800-89801600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr10:89798800-89801600	Weak transcription	Dnd41	blood
18	chr10:89799400-89803400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:89799600-89801200	Weak transcription	HSMMtube	muscle
20	chr10:89799800-89801200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:89799800-89801200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:89799800-89801200	Weak transcription	Aorta	Aorta
23	chr10:89799800-89801200	Weak transcription	Osteobl	bone
24	chr10:89799800-89801400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:89799800-89801400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:89799800-89801400	Weak transcription	Fetal Thymus	thymus
27	chr10:89799800-89801600	Weak transcription	HSMM	muscle
28	chr10:89800000-89801000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:89800000-89801200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:89800200-89801200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:89800800-89801400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:89800800-89802800	Enhancers	NH-A	brain
33	chr10:89800800-89803600	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links