Variant report

Variant	rs2078166
Chromosome Location	chr10:89790363-89790364
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10159827	0.90[EUR][1000 genomes]
rs11202635	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12240758	0.90[EUR][1000 genomes]
rs12264326	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12412656	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12413500	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12414916	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12781238	0.88[AFR][1000 genomes]
rs1414892	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4933464	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4934374	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7069904	1.00[YRI][hapmap]
rs72816127	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7907255	0.98[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89783200-89792200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:89787600-89790600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:89787600-89792000	Weak transcription	Osteobl	bone
4	chr10:89787600-89792200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:89788000-89791800	Weak transcription	NHDF-Ad	bronchial
6	chr10:89788200-89790400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:89788800-89790400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:89788800-89790600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:89788800-89796800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:89788800-89797200	Weak transcription	Fetal Thymus	thymus
11	chr10:89788800-89801400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:89789000-89791600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:89789000-89793200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:89789200-89793400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:89789200-89797600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:89789400-89790400	Weak transcription	Dnd41	blood
17	chr10:89789400-89792400	Weak transcription	NHEK	skin
18	chr10:89789800-89790600	Enhancers	Fetal Intestine Large	intestine
19	chr10:89789800-89791000	Enhancers	Fetal Intestine Small	intestine
20	chr10:89790200-89790600	Enhancers	Gastric	stomach
21	chr10:89790200-89790600	Enhancers	Left Ventricle	heart
22	chr10:89790200-89790600	Enhancers	Right Atrium	heart
23	chr10:89790200-89790800	Enhancers	K562	blood
24	chr10:89790200-89791200	Enhancers	GM12878-XiMat	blood

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