Variant report

Variant	rs11205315
Chromosome Location	chr1:150001606-150001607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150001605..150003568-chr1:150005160..150008934,3	K562	blood:
2	chr1:149996021..149997828-chr1:150000191..150002911,2	K562	blood:
3	chr1:149982534..149985249-chr1:150000444..150003227,2	MCF-7	breast:
4	chr1:149982099..149984155-chr1:150000298..150002375,2	K562	blood:
5	chr1:150000977..150003866-chr1:150038010..150039668,2	MCF-7	breast:
6	chr1:149970241..149972986-chr1:150000025..150002958,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VPS45-6	chr1:150001446-150003978	NONHSAT006264

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11205335	1.00[AMR][1000 genomes]
rs11205336	1.00[AMR][1000 genomes]
rs12058370	1.00[AFR][1000 genomes]
rs12058676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060128	1.00[AMR][1000 genomes]
rs12079624	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12085962	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57859152	1.00[AMR][1000 genomes]
rs58826204	1.00[AMR][1000 genomes]
rs6698713	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6698937	1.00[AMR][1000 genomes]
rs7528173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7535225	1.00[AMR][1000 genomes]
rs9887822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149985600-150022000	Weak transcription	Brain Substantia Nigra	brain
2	chr1:149993800-150005400	Weak transcription	Fetal Heart	heart
3	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
4	chr1:150001400-150001800	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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